Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1647579	1647665	87	2 [1]	[1] 2	[lipM]	[lipM]

GCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAATTCAAGTGGCTTAAATTCTATATTTAAACCTTTCTTAAAACCTTTCTCGAAAGCTTCTTCCATTTGACTAATAGTAATGTGTTCATCTGAAATAT  >  USA300TCH1516_ALE/1647611‑1647806                                                        |                                                                                                                                             gCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAATTCAAGTGGCTTAAATTCTATATTTAAACCTTTCTTaaaa                                                         >  1:25446/1‑141 (MQ=255)                                                        atTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAATTCAAGTGGCTTAAATTCTATATTTAAACCTTTCTTAAAACCTTTCTCGAAAGCTTCTTCCATTTGACTAATAGTAATGTGTTCATCTGAAatat  <  2:33395/141‑1 (MQ=255)                                                        |                                                                                                                                             GCTTCCATTTTTTATTCTAAAAACTACTTTCTAAACATCCATTCATCTGAACGATATTTTTCAGTTAATTCTTCCACTTCTGCCAATTGAGCTTCTGTTAATTCAAGTGGCTTAAATTCTATATTTAAACCTTTCTTAAAACCTTTCTCGAAAGCTTCTTCCATTTGACTAATAGTAATGTGTTCATCTGAAATAT  >  USA300TCH1516_ALE/1647611‑1647806

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑