Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1708503	1708698	196	2 [1]	[1] 2	[USA300HOU_RS08530]	[USA300HOU_RS08530]

AGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGATAGTTTTATTATCAGCATACATTTTTAATACCTCAC  >  USA300TCH1516_ALE/1708659‑1708839                                         |                                                                                                                                             aGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTa                                          >  2:58405/1‑141 (MQ=255)                                         tAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGATAGTTTTATTATCAGCATACATTTTTAATACCTCAc  >  1:56897/1‑141 (MQ=255)                                         |                                                                                                                                             AGTGTTAGCATCCTTACTGCTGTTTTTATTTGTAACAACATAATGACAGGTACTTTATATTTCACTGTCAAAGATTATTAATGATTAACTTAATTAAATTATGATTTGAATAAATAGATATCTAAATGCAATTTGTCACTATTGATAGTTTTATTATCAGCATACATTTTTAATACCTCAC  >  USA300TCH1516_ALE/1708659‑1708839

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑