Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1741018	1741365	348	2 [1]	[1] 2	[lytC]–[dtd]	[lytC],[dtd]

TTAAAGTTTAATTTATTATTGTCATCTTCAAATAATCTTGCATTAGCAATTTTCTTTGCAATTACATCTGCATCTTGCTCTGTAGAGTTCTGACCGATACCGACTAATAAACAATATCCTTTTTTGATTTGATTATTTAATGTATCATTCGTCACCGATGCTTCTTTAACTCT  >  USA300TCH1516_ALE/1741334‑1741506                                 |                                                                                                                                             ttAAAGTTTAATTTATTATTGTCATCTTCAAATAATCTTGCATTAGCAATTTTCTTTGCAATTACATCTGCATCTTGCTCTGTAGAGTTCTGACCGATACCGACTAATAAACAATATCCTTTTTTGATTTGATTATTTAAt                                  >  2:52263/1‑141 (MQ=255)                                 taatCTTGCATTAGCAATTTTCTTTGCAATTACATCTGCATCTTGCTCTGTAGAGTTCTGACCGATACCGACTAATAAACAATATCCTTTTTTTTTTTTTTTTTTTAATGTATCATTCGTCACCGATGCTTCTTTAActct  >  2:30913/1‑141 (MQ=255)                                 |                                                                                                                                             TTAAAGTTTAATTTATTATTGTCATCTTCAAATAATCTTGCATTAGCAATTTTCTTTGCAATTACATCTGCATCTTGCTCTGTAGAGTTCTGACCGATACCGACTAATAAACAATATCCTTTTTTGATTTGATTATTTAATGTATCATTCGTCACCGATGCTTCTTTAACTCT  >  USA300TCH1516_ALE/1741334‑1741506

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑