Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1743691	1743721	31	2 [1]	[1] 2	relA	GTP pyrophosphokinase

TCTGCACTATATGGATATTCGTTGTTCATTATATGATACACCCCATTCATATTTATTACTTCGCCTTAAACAATGATTTAGGTACTCTTGTTGAATAGTATTTGTCCCACACCAATCATACGTCCGTCGACGATAAATATTTATCCTGTCGTCATTAATCGTAATA  >  USA300TCH1516_ALE/1743697‑1743862                          |                                                                                                                                             tCTGCACTAGATGGATATTCGTTGTTCATTATATGATACACCCCATTCATATTTATTACTTCGCCTTAAACAATGATTTAGGTACTCTTGTTGAATAGTATTTGTCCCACACCAATCATACGTCCGTCGACGATAAATAtt                           <  2:23105/141‑1 (MQ=255)                          tCATTATATGATACACCCCATTCATATTTATTACTTCGCCTTAAACAATGATTTAGGTACTCTTGTTGAATAGTATTTGTCCCACACCAATCATACGTCCGTCGACGATAAATATTTATCCTTTCGTCATTAATCGTAata  >  2:12781/1‑141 (MQ=255)                          |                                                                                                                                             TCTGCACTATATGGATATTCGTTGTTCATTATATGATACACCCCATTCATATTTATTACTTCGCCTTAAACAATGATTTAGGTACTCTTGTTGAATAGTATTTGTCCCACACCAATCATACGTCCGTCGACGATAAATATTTATCCTGTCGTCATTAATCGTAATA  >  USA300TCH1516_ALE/1743697‑1743862

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑