Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1778458	1778635	178	2 [1]	[1] 2	USA300TCH1516_01663	hypothetical protein

TCATTGATAACGTATCAAAATCAGCTAATGACTGAGTCAATCGTTTTTCATCTTCAATTAATTTTGACTTAGCAAATTCTTTAAGAGGATGTAATGCCATTCTTGTTTTGTGATCTTTGACTTCATCAATAATTTGATGAATTACTTCTACCGCTTC  >  USA300TCH1516_ALE/1778620‑1778776                 |                                                                                                                                             tCATTGATAACGTATCAAAATCAGCTAATGACTGAGTCAATCGTTTTTCATCTTCAATTAATTTTGACTTAGCAAATTCTTTAAGAGGATGTAATGCCATTCTTGTTTTGTGATCTTTGACTTCATCAATAATTTGATGaa                  >  2:2820/1‑141 (MQ=255)                 aaaaTCAGCTAATGACTGAGTCAATCGTTTTTCATCTTCAATTAATTTTGACTTAGCAAATTCTTTAAGCGGATGAAATGCCACTCCCATTTTGTGTAACTTGTCGTCATTAATACTTTGCTGCATTACTTCTACCGCTTc  >  1:58085/1‑141 (MQ=255)                 |                                                                                                                                             TCATTGATAACGTATCAAAATCAGCTAATGACTGAGTCAATCGTTTTTCATCTTCAATTAATTTTGACTTAGCAAATTCTTTAAGAGGATGTAATGCCATTCTTGTTTTGTGATCTTTGACTTCATCAATAATTTGATGAATTACTTCTACCGCTTC  >  USA300TCH1516_ALE/1778620‑1778776

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑