Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1797520	1797566	47	2 [1]	[1] 2	phoR	Alkaline phosphatase synthesis sensor protein PhoR

TTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCAATAAATCTATATTTTGCTGTTTTACAATTTTTTTAACTTTATCAATCTCATTATCTTGGACTAAATAAATATATGATCTTGCATCTGTTGCTAGAGCTTGTTCGTGTTTTTCTGATAAAACATATGTGATGGAAGCG  >  USA300TCH1516_ALE/1797531‑1797707                                     |                                                                                                                                             ttGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCAATAAATCTATATTTTGCTGTTTTACAATTTTTTTAACTTTATCAATCTCATTATCTTGGACTAAATAAATATATGATCTTGCATCTGTTGCTAGAGCTTGt                                      <  2:28952/141‑1 (MQ=255)                                     aTCAATAAATCTATATTTTGCTGTTTTACAATTTTTTTAACTTTATCAATCTCATTATCTTGGACTAAATAAATATATGATCTTGCATCTGTTGCTAGAGCTTGTTCGTGTTTTTCTGATAAAACATATGTGATGGAAGCg  <  1:295/141‑1 (MQ=255)                                     |                                                                                                                                             TTGCCACTACTAAACACCTTTTTATCATGCTTAGTTATCAATAAATCTATATTTTGCTGTTTTACAATTTTTTTAACTTTATCAATCTCATTATCTTGGACTAAATAAATATATGATCTTGCATCTGTTGCTAGAGCTTGTTCGTGTTTTTCTGATAAAACATATGTGATGGAAGCG  >  USA300TCH1516_ALE/1797531‑1797707

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑