Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ USA300TCH1516_ALE 1823682 1823765 84 2 [1] [1] 2 ackA Acetate kinase

AGCACGAATACCCATCAAGTTAGCTGGGTTGTGAAGCGGTGCTAATTCGCTTAATTCTTCAATTTCCTTTTCAACCTCATCAGTAATAGCTACTGATTCAGGGAATTTTTCACCACCATGTACAACACGGTGACCTGTTCCATCGATATCGTTAATATCATTAATAATATTGTGC  >  USA300TCH1516_ALE/1823732‑1823906
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aGCACGAATACCCATCAAGTTAGCTGGGTTGTGAAGCGGTGCTAATTCGCTTAATTCTTCAATTTCCTTTTCAACCTCATCAGTAATAGCTACTGATTCAGGGAATTTTTCACCACCATGTACAACACGGTGACCTGTTcc                                    >  1:62374/1‑141 (MQ=255)
                                  aGCGGTGCTAATTCGCTTAATTCTTCAATTTCCTTTTCAACCTCATCAGTAATAGCTACTGATTCAGGGAATTTTTCACCACCATGTACAACACGGTGACCTGTTCCATCGATATCGTTAATATCATTAATAATATTGTgc  <  2:64191/141‑1 (MQ=255)
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AGCACGAATACCCATCAAGTTAGCTGGGTTGTGAAGCGGTGCTAATTCGCTTAATTCTTCAATTTCCTTTTCAACCTCATCAGTAATAGCTACTGATTCAGGGAATTTTTCACCACCATGTACAACACGGTGACCTGTTCCATCGATATCGTTAATATCATTAATAATATTGTGC  >  USA300TCH1516_ALE/1823732‑1823906

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: