Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1844689	1844745	57	2 [1]	[1] 2	mrcA/isdH	Penicillin‑binding protein 1A/Iron‑regulated surface determinant protein H

CAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTAATCATACATATGCTATATTTAGTTAATTATTTAGATTCTTTTCTGAATTTAGGAATGAATAAAGCTAACATACCTAATAACGCATATAAGCCCCACCATGATTGGCT  >  USA300TCH1516_ALE/1844736‑1844886           |                                                                                                                                             caatAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTAATCATACATATGCTATATTTAGTTAATTATTTAGATTCTTTTCTGAATTTAGGAATGAATAAAGCTAACATACCTAATAACGCATATAAGCCccacc            <  2:43723/141‑1 (MQ=255)           taAATTAATTGCTTTCACATTGTCTACAAAGTTAATCATACATATGCTATATTTAGTTAATTATTTAGATTCTTTTCTGAATTTAGGAATGAATAAAGCTAACATACCTAATAACGCATATAAGCCCCACCATGATTGGCt  <  1:59665/141‑1 (MQ=255)           |                                                                                                                                             CAATAGTTTATAAATTAATTGCTTTCACATTGTCTACAAAGTTAATCATACATATGCTATATTTAGTTAATTATTTAGATTCTTTTCTGAATTTAGGAATGAATAAAGCTAACATACCTAATAACGCATATAAGCCCCACCATGATTGGCT  >  USA300TCH1516_ALE/1844736‑1844886

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑