Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1856435	1856465	31	2 [0]	[1] 2	aroF/USA300HOU_RS09235	Phospho‑2‑dehydro‑3‑deoxyheptonate aldolase/hypothetical protein

CTGACATTTCGATTTTCTCAGTCATTATTGGAAAGTTATATTCTATATTGATATTTATTAGCAAATGTTAATCAATTAAATAAGTGTCATTATTATAGCTTATTTTGAGTCAACATTACTGCTTTTAAGAAAAATTTTCGTTT  >  USA300TCH1516_ALE/1856463‑1856605    |                                                                                                                                            ctaaCATTTCGTTTTTCTCAGTCATTGGTGGATGCGTAGATTCGATTTTTATATTTATTAGCAAATGTTAAGCAATTAAATAAGTGTCATTATTATAGCTTATTTTGAGTCAACATTACTGCTTTTAAGAAAAATTTTCGt    <  1:45694/138‑1 (MQ=255)   gACATTTCGATTTTCTCAGTCATTATTGGAAAGTTATATTCTATATTGATATTTATTAGCAAATGTTAATCAATTAAATAAGTGTCATTATTATAGCTTATTTTGAGTCAACATTACTGCTTTTAAGAAAAATTTTCGttt  <  1:20346/141‑1 (MQ=255)    |                                                                                                                                            CTGACATTTCGATTTTCTCAGTCATTATTGGAAAGTTATATTCTATATTGATATTTATTAGCAAATGTTAATCAATTAAATAAGTGTCATTATTATAGCTTATTTTGAGTCAACATTACTGCTTTTAAGAAAAATTTTCGTTT  >  USA300TCH1516_ALE/1856463‑1856605

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑