Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1921895	1921963	69	2 [1]	[1] 2	menE	2‑succinylbenzoate‑‑CoA ligase

ATCATAGTGGCAGATAATTTAGCACCGCCGAGTAATATTTTTTGTAAATTATAAGGTTCATGTAAACCTTGTTGCATAAGCCAATTTAAAGTTTGTGGCACAAGCGAAATGTGCGTGATTCGTTCATTTTTAATCATCGTTAAAATTTGTTCGGCATTGAAT  >  USA300TCH1516_ALE/1921943‑1922104                      |                                                                                                                                             aTCATAGTGGCAGATAATTTAGCACCGCCGAGTAATATTTTTTGTAAATTATAAGGTTCATGTAAACCTTGTTGCATAAGCCAATTTAAAGTTTGTGGCACAAGCGAAATGTGCGTGATTCGTTCATTTTTAATCATCGtt                       >  2:5009/1‑141 (MQ=255)                      gCACCGCCGAGTAATATTTTTTGTAAATTATAAGGTTCATGTAAACCTTGTTGCATAAGCCAATTTAAAGTTTGTGGCACAAGCGAAATGTGCGTGATTCGTTCATTTTTAATCATCGTTAAAATTTGTTCGGCATTGAAt  >  1:16363/1‑141 (MQ=255)                      |                                                                                                                                             ATCATAGTGGCAGATAATTTAGCACCGCCGAGTAATATTTTTTGTAAATTATAAGGTTCATGTAAACCTTGTTGCATAAGCCAATTTAAAGTTTGTGGCACAAGCGAAATGTGCGTGATTCGTTCATTTTTAATCATCGTTAAAATTTGTTCGGCATTGAAT  >  USA300TCH1516_ALE/1921943‑1922104

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑