Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1946079	1946161	83	3 [1]	[1] 2	USA300HOU_RS09665/USA300HOU_RS15380	hypothetical protein/hypothetical protein

TGTCGTCTTATTTTTACATTTATATAATAACACGCAATTCAATAAAATGTCTAATCAATAAACCTCAATTACATTCAAATTCAAAAACTTTTCACCTAATATTCATCGCTTAAATAAACATTACGTTTAATTAAACAGACATTG  >  USA300TCH1516_ALE/1946159‑1946302    |                                                                                                                                             tGTCGTCTTATTTTTACATTTATATAATAACACGCAATTCAATAAAATGTCTAATCAATAAACCTCAATTACATTCAAATTCAAAAACTTTTCACCTAATATTCATCGCTTAAATAAACATTACGTTTAATTAAACAGACa     <  2:32086/141‑1 (MQ=255)    cgtcTTATTTTTACATTTATATAATAACACGCAATTCAATAAAATGTCTAATCAATAAACCTCAATTACATTCAAATTCAAAAACTTTTCACCTAATATTCATCGCTTAAATAAACATTACGTTTAATTAAACAGACATTg  >  2:5152/1‑141 (MQ=255)    |                                                                                                                                             TGTCGTCTTATTTTTACATTTATATAATAACACGCAATTCAATAAAATGTCTAATCAATAAACCTCAATTACATTCAAATTCAAAAACTTTTCACCTAATATTCATCGCTTAAATAAACATTACGTTTAATTAAACAGACATTG  >  USA300TCH1516_ALE/1946159‑1946302

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑