Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	1986007	1986054	48	2 [1]	[1] 2	fumC	Fumarate hydratase class II

CATTCATATTACTTTGTGTACCGCTTCCTGTTTGCCATACAACTAGTGGGAAGTGTTCATCTAATTCACCTGATAAAATTTGATCACATGCGTATACAATGGCATCTTTCTTTGCCTCGCTTAATTTTCCTAAATCAAAATTAGCTATTGCTGCTGCACGCT  >  USA300TCH1516_ALE/1986034‑1986195                      |                                                                                                                                             caTTCATATTACTTTGTGTACCGCTTCCTGTTTGCCATACAACTAGTGGGAAGTGTTCATCTAATTCACCTGATAAAATTTGATCACATGCGTATACAATGGCATCTTTCTTTGCCTCGCTTAATTTTCCTAAATCAAAAt                       >  2:40339/1‑141 (MQ=255)                      cGCTTCCTGTTTGCCATACAACTAGTGGGAAGTGTTCATCTAATTCACCTGATAAAATTTGATCACATGCGTATACAATGGCATCTTTCTTTGCCTCGCTTAATTTTCCTAAATCAAAATTAGCTATTGCTGCTGCACGCt  >  2:54282/1‑141 (MQ=255)                      |                                                                                                                                             CATTCATATTACTTTGTGTACCGCTTCCTGTTTGCCATACAACTAGTGGGAAGTGTTCATCTAATTCACCTGATAAAATTTGATCACATGCGTATACAATGGCATCTTTCTTTGCCTCGCTTAATTTTCCTAAATCAAAATTAGCTATTGCTGCTGCACGCT  >  USA300TCH1516_ALE/1986034‑1986195

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑