Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2009701	2009754	54	2 [1]	[1] 2	USA300HOU_RS10125	Putative multidrug export ATP‑binding/permease protein

AAATTGGAGCTTCGTTATCGTTATATTGAAAACTAACATGATCAATATCAATACGACCTTGTTTAATTTCAATAGGTTGAGCACCAACACCATTTTTGATGTCATAATCTTCATCAATTAATTGGAATACACGGTCCATTGAAGCAAAACTTTGCGTTAAAGTTG  >  USA300TCH1516_ALE/2009731‑2009895                         |                                                                                                                                             aaaTTGGAGCTTCGTTATCGTTATATTGAAAACTAACATGATCAATATCAATACGACCTTGTTTAATTTCAATAGGTTGAGCACCAACACCATTTTTGATGTCATAATCTTCATCAATTAATTGGAATACACGGTCCATTg                          >  2:36459/1‑141 (MQ=255)                         atTGAAAACTAACATGATCAATATCAATACGACCTTGTTTAATTTCAATAGGTTGAGCACCAACACCATTTTTGATGTCATAATCTTCATCAATTAATTGGAATACACGGTCCATTGAAGCAAAACTTTGCGTTAAAGTTg  <  1:19314/141‑1 (MQ=255)                         |                                                                                                                                             AAATTGGAGCTTCGTTATCGTTATATTGAAAACTAACATGATCAATATCAATACGACCTTGTTTAATTTCAATAGGTTGAGCACCAACACCATTTTTGATGTCATAATCTTCATCAATTAATTGGAATACACGGTCCATTGAAGCAAAACTTTGCGTTAAAGTTG  >  USA300TCH1516_ALE/2009731‑2009895

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑