Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2024893	2024917	25	2 [1]	[1] 2	USA300HOU_RS10210/USA300HOU_RS10215	hypothetical protein/hypothetical protein

ATAGTTACTTTATAAAACATTACATAGAGAAAGGTTAAGGAGTGCACATGTCGAAAAAGGATCACTCTTCTTCAAAATACCTTAATTCTGTTAAGGAAGCGCAAGAGGAGTCAAAAAAGAAAAATAAAAGTAATCCCAAAATTGATGTTGATCGT  >  USA300TCH1516_ALE/2024904‑2025058               |                                                                                                                                             aTAGTTACTTTATAAAACATTACATAGAGAAAGGTTAAGGAGTGCACATGTCGAAAAAGGATCACTCTTCTTCAAAATACCTTAATTCTGTTAAGGAAGCGCAAGAGGAGTCAAAAAAGAAAAATAAAAGTAATCCCaaaa                <  1:11335/141‑1 (MQ=255)               aaaCATTACATAGAGAAAGGTTAAGGAGTGCACATGTCGAAAAAGGATCACTCTTCTTCAAAATACCTTAATTCTGTTAAGGAAGCGCAAGAGGAGTCAAAAAAGAAAAAAAAAAGTAATCCAAAAATTGATGTTGATCGt  >  1:2719/1‑141 (MQ=255)               |                                                                                                                                             ATAGTTACTTTATAAAACATTACATAGAGAAAGGTTAAGGAGTGCACATGTCGAAAAAGGATCACTCTTCTTCAAAATACCTTAATTCTGTTAAGGAAGCGCAAGAGGAGTCAAAAAAGAAAAATAAAAGTAATCCCAAAATTGATGTTGATCGT  >  USA300TCH1516_ALE/2024904‑2025058

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑