Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2059386	2059441	56	2 [1]	[1] 2	pncB2	Nicotinate phosphoribosyltransferase pncB2

AACTTCAAAAATACGTTTATGTTTATTATCCCAACATGCCTTGCTTAAATCGACTGGATATTCTTGTGGATTCAGGAAACGCTTATTTTCATCCCAAATAGATTGTAATCCTAGTGCTAAATATTCACGTGATTCATCTTCTGTTGGCATTTGATATACTAATTTACC  >  USA300TCH1516_ALE/2059415‑2059582                            |                                                                                                                                             aaCTTCAAAAATACGTTTATGTTTATTATCCCAACATGCCTTGCTTAAATCGACTGGATATTCTTGTGGATTCAGGAAACGCTTATTTTCATCCCAAATAGATTGTAATCCTAGTGCTAAATATTCACGTGATTCAtcttc                             <  2:40851/141‑1 (MQ=255)                            atCCCAACATGCCTTGCTTAAATCGACTGGATATTCTTGTGGATTCAGGAAACGCTTATTTTCATCCCAAATAGATTGTAATCCTAGTGCTAAATATTCACGTGATTCATCTTCTGTTGGCATTTGATATACTAATTTAcc  <  1:42427/141‑1 (MQ=255)                            |                                                                                                                                             AACTTCAAAAATACGTTTATGTTTATTATCCCAACATGCCTTGCTTAAATCGACTGGATATTCTTGTGGATTCAGGAAACGCTTATTTTCATCCCAAATAGATTGTAATCCTAGTGCTAAATATTCACGTGATTCATCTTCTGTTGGCATTTGATATACTAATTTACC  >  USA300TCH1516_ALE/2059415‑2059582

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑