Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2077131	2077204	74	2 [1]	[1] 2	USA300HOU_RS10480	hypothetical protein

AGATACGACTAGTATCGCTAAATATGTTAAAGGACTTTTAAATATACTATAAAAATCATACTTAACTAAATTTAAAATTCTCATTATTTATCACCTCTTTGATTTATATTGAAGTACGTATCACGCAATGAACTTTTACGTGTTTCAATATATTTCGGAT  >  USA300TCH1516_ALE/2077186‑2077345                    |                                                                                                                                             aGATACGACTAGTATCGCTAAATATGTTAAAGGACTTTTAAATATACTATAAAAATCATACTTAACTAAATTTAAAATTCTCATTATTTATCACCTCTTTGATTTATATTGAAGTACGTATCACGCAATGAACTTTTACgt                     >  1:9923/1‑141 (MQ=255)                    aaaTATGTTAAAGGACTTTTAAATATACTATAAAAATCATACTTAACTAAATTTAAAATTCTCATTATTTATCACCTCTTTGATTTATATTGAAGTACGTATCACGCAATGAACTTTTACGTGTTTCAATATATTTCGGAt  <  1:37688/141‑1 (MQ=255)                    |                                                                                                                                             AGATACGACTAGTATCGCTAAATATGTTAAAGGACTTTTAAATATACTATAAAAATCATACTTAACTAAATTTAAAATTCTCATTATTTATCACCTCTTTGATTTATATTGAAGTACGTATCACGCAATGAACTTTTACGTGTTTCAATATATTTCGGAT  >  USA300TCH1516_ALE/2077186‑2077345

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑