Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2109708	2109809	102	2 [1]	[1] 3	USA300HOU_RS10675	hypothetical protein

AATGGTAATGTTGGAAAATACCATTTTTCAATAAATTTGATACAATCCTCGATTTTCTGTTCATCAAAATATACATCATCTCGTGAATATATATGTTTTTGTAGATAATTAAAGAGATCAATTCTTTCTTTATTTAAAATTATCTTTCCTTGTTTCCACAAAT  >  USA300TCH1516_ALE/2109788‑2109950                       |                                                                                                                                             aaTGGTAATGTTGGAAAATACCATTTTTCAATAAATTTGATACAATCCTCGATTTTCTGTTCATCAAAATATACATCATCTCGTGAATATATATGTTTTTGTAGATAATTAAAGAGATCAATTCTTTCTTTATTTAAAAtt                        >  1:16366/1‑141 (MQ=255)                       aTTTTTCAATAAATTTGATACAATCCTCGATTTTCTGTTCATCAAAATATACATCATCTCGTGAATATATATGTTTTTGTAGATAATTAAAGAGATCAATTCTTTCTTTCTTTAAAATTATCTTTCCTTGTTTCCACAAAt  >  2:44732/1‑141 (MQ=255)                       aTTTTTCAATAAATTTGATACAATCCTCGATTTTCTGTTCATCAAAATATACATCATCTCGTGAATATATATGTTTTTGTAGATAATTAAAGAGATCAATTCTTTCTTTATTTAAAATTATCTTTCCTTGTTTCCACAAAt  >  1:45871/1‑141 (MQ=255)                       |                                                                                                                                             AATGGTAATGTTGGAAAATACCATTTTTCAATAAATTTGATACAATCCTCGATTTTCTGTTCATCAAAATATACATCATCTCGTGAATATATATGTTTTTGTAGATAATTAAAGAGATCAATTCTTTCTTTATTTAAAATTATCTTTCCTTGTTTCCACAAAT  >  USA300TCH1516_ALE/2109788‑2109950

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑