Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2164656	2164716	61	2 [1]	[1] 2	tsaE	tRNA threonylcarbamoyladenosine biosynthesis protein TsaE

GATCTTCGAAAAATTCATCAAATCCTAAATCTTCATCAGAATCTTCTAAGCGATAACAATCCATATGATGCAATTTTAAATTTTTACCCCTATATGATTTAATGATGTTAAATGTCGGGGAATTAATCGTACGTCTTACACCAA  >  USA300TCH1516_ALE/2164714‑2164857    |                                                                                                                                             gATCTTCGAAAAATTCATCAAATCCTAAATCTTCATCAGAATCTTCTAAGCGATAACAATCCATATGATGCAATTTTAAATTTTTACCCCTATATGATTTAATGATGTTAAATGTCGGGGAATTAATCGTACGTCTTacac     <  1:6504/141‑1 (MQ=255)    cTTCGAAAAATTCATCAAATCCTAAATCTTCATCAGAATCTTCTAAGCGATAACAATCCATATGATGCAATTTTAAATTTTTACCCCTATATGATTTAATGATGTTAAATGTCGGGGAATTAATCGTACGTCTTACACCaa  <  2:30952/141‑1 (MQ=255)    |                                                                                                                                             GATCTTCGAAAAATTCATCAAATCCTAAATCTTCATCAGAATCTTCTAAGCGATAACAATCCATATGATGCAATTTTAAATTTTTACCCCTATATGATTTAATGATGTTAAATGTCGGGGAATTAATCGTACGTCTTACACCAA  >  USA300TCH1516_ALE/2164714‑2164857

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑