Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2170350	2170376	27	2 [1]	[1] 2	ilvC	Ketol‑acid reductoisomerase (NADP(+))

CCTTTTATTAAATCTAAAAGCATTGAAAAATAAGATAGACCTACAATGAGGAGTTGTTAAATATGAGTAGTCATATTCAAATTTTTGATACGACACTAAGAGACGGTGAACAAACACCAGGAGTGAATTTTACTTTTGATGAACGCTTGCGTATTGCATT  >  USA300TCH1516_ALE/2170358‑2170517                    |                                                                                                                                             ccTTTTATTAAATCTAAAAGCATTGAAAAATAAGATAGACCTACAATGAGGAGTTGTTAAATCTGAGTAGTCATCTTCAAATTTTTGATACGACACTAAGACACGGTGAACAAACACCAGGAGTGAATCTTACTTTtgata                     >  1:24657/1‑140 (MQ=255)                    gCATTGAAAAATAAGATAGACCTACAATGAGGAGTTGTTAAATATGAGTAGTCATATTCAAATTTTTGATACGACACTAAGAGACGGTGAACAAACACCAGGAGTGAATTTTACTTTTGATGAACGCTTGCGTattgcatt  >  1:4922/1‑141 (MQ=255)                    |                                                                                                                                             CCTTTTATTAAATCTAAAAGCATTGAAAAATAAGATAGACCTACAATGAGGAGTTGTTAAATATGAGTAGTCATATTCAAATTTTTGATACGACACTAAGAGACGGTGAACAAACACCAGGAGTGAATTTTACTTTTGATGAACGCTTGCGTATTGCATT  >  USA300TCH1516_ALE/2170358‑2170517

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑