Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2191553	2191638	86	2 [1]	[1] 2	USA300HOU_RS11195	hypothetical protein

ATATGCTTTGTCTCGTTTAATAAACGGCAATATCGGCACACTACCTGAATCATTGTCATCATCTTCGATTTTTTTATTTTCAAAATCACTTGTGATGATAAAATGTATTGCTGTGTAGCCAAATAATCTTCGTATATATGACTGACGTTCAACAACAGCTTGCAATCGTTTCGTTGGTACAGTTACTTTCTTCTTGTTAAAGAGACCATA  >  USA300TCH1516_ALE/2191570‑2191779                                                                      |                                                                                                                                             atatGCTTTGTCTCGTTTAATAAACGGCAATATCGGCACACTACCTGAATCATTGTCATCATCTTCGATTTTTTTATTTTCAAAATCACTTGTGATGATAAAATGTATTGCTGTGTAGCCAAATAATCTTCGTATATAtga                                                                       <  1:34966/141‑1 (MQ=255)                                                                      ttttttATTTTCAAAATCACTTGTGATGATAAAATGTATTGCTGTGTAGCCAAATAATCTTCGTATATATGACTGACGTTCAACAACAGCTTGCAATCGTTTCGTTGGTACAGTTACTTTCTTCTTGTTAAAGAGACCata  <  2:62837/141‑1 (MQ=255)                                                                      |                                                                                                                                             ATATGCTTTGTCTCGTTTAATAAACGGCAATATCGGCACACTACCTGAATCATTGTCATCATCTTCGATTTTTTTATTTTCAAAATCACTTGTGATGATAAAATGTATTGCTGTGTAGCCAAATAATCTTCGTATATATGACTGACGTTCAACAACAGCTTGCAATCGTTTCGTTGGTACAGTTACTTTCTTCTTGTTAAAGAGACCATA  >  USA300TCH1516_ALE/2191570‑2191779

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑