Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2274772	2275031	260	2 [1]	[1] 2	mtlR	Transcriptional regulator MtlR

AATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGTACCAACTATCTTTATCTCGAAAGCGTGGCGAAGGCATTTACTTGGTAGGTACTGAATCAAAGAAACGTGAATTTTTAAGTCAATTAATGGTGAATAACTTAAATAGTACTAGC  >  USA300TCH1516_ALE/2274976‑2275172                                                         |                                                                                                                                             aaTCTAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATGTAGAGCTTGATTTAAATAAGTACCAACTATCTTTATCTCGAAAGCGTGGCGAAGGCATTTACTTGGTAGGTACTGAAt                                                          >  2:53642/1‑141 (MQ=255)                                                         gatgatTTAGAGCTTGATTTAAATAAGTACCAACTATCTTTATCTCGAAAGCGTGGCGAAGGCATTTACTTGGTAGGTACTGAATCAAAGAAACGTGAATTTTTAAGTCAATTAATGGTGAATAACTTAAATAGTACTAGc  >  2:12694/1‑141 (MQ=255)                                                         |                                                                                                                                             AATATAGTTTAGCGCAAGAAATTGGCGTTTCTGTCCAGACTTTAGCAAAGATGTTAGATGATTTAGAGCTTGATTTAAATAAGTACCAACTATCTTTATCTCGAAAGCGTGGCGAAGGCATTTACTTGGTAGGTACTGAATCAAAGAAACGTGAATTTTTAAGTCAATTAATGGTGAATAACTTAAATAGTACTAGC  >  USA300TCH1516_ALE/2274976‑2275172

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑