Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2355540	2355576	37	2 [1]	[1] 2	ecfA2	Energy‑coupling factor transporter ATP‑binding protein EcfA2

CACTATACTACCTTCTTTCATAACGATGACTTCATCTGCATAACGCGCGACTTCATTCATATCATGTGAAATTAGGATAATTGCCTTATTTTCATCTGTTTGTAGTGACTTTAGTAATCTCATTACTTGTCGTTTACTTTGTGGATCA  >  USA300TCH1516_ALE/2355570‑2355717        |                                                                                                                                             cacTATACTACCTTCTTTCATAACGATGACTTCATCTGCATAACGCGCGACTTCATTCATATCATGTGAAATTAGGATAATTGCCTTATTTTCATCTGTTTGTAGTGACTTTAGTAATCTCATTACTTGTCGTTTACTTtg         <  1:52023/141‑1 (MQ=255)        ctacCTTCTTTCATAACGATTACTTCATCTGCATAACGCGCGACTTCATTCATATCATGTGAAATTAGGATAATTGCCTTATTTTCATCTGTTTGTAGTGACTTTAGTAATCTCATTACTTGTCGTTTACTTTGTGGATCa  <  1:51186/141‑1 (MQ=255)        |                                                                                                                                             CACTATACTACCTTCTTTCATAACGATGACTTCATCTGCATAACGCGCGACTTCATTCATATCATGTGAAATTAGGATAATTGCCTTATTTTCATCTGTTTGTAGTGACTTTAGTAATCTCATTACTTGTCGTTTACTTTGTGGATCA  >  USA300TCH1516_ALE/2355570‑2355717

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑