Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2511470	2511569	100	2 [1]	[1] 2	mta	HTH‑type transcriptional activator mta

ATTATGCTGTATTGCTAAAACATATGAAGATGATACGCGTTTCAAAGATTACTTTAATTCATATGATAATCAAAATTTAGCATCATACATTTCAGAAGCTGTTAATTATTTTTTGAGCAATGTGAATAAGAGCGACAATTTTTAATCCTCATACAGATGCTACA  >  USA300TCH1516_ALE/2511547‑2511710                        |                                                                                                                                             aTTATGCTGTATTGCAAAAACATATGAAGATGATACGCGTTTCAAAGATTACTTTAATTCATATGATAATCAAAATTTAGCATCATACATTTCAGAAGCTGTTAATTATTTTTTGAGCAATGTGAATAAGAGCGACAAttt                         >  2:49520/1‑141 (MQ=255)                        atGAAGATGATACGCGTTTCAAAGATTACTTTAATTCATATGATAATCAAAATTTAGCATCATACATTTCAGAAGCTGTTAATTATTTTTTGAGCAATGTGAATAAGAGCGACAATTTTTAATCCTCATACAGATGCTaca  <  2:30002/141‑1 (MQ=255)                        |                                                                                                                                             ATTATGCTGTATTGCTAAAACATATGAAGATGATACGCGTTTCAAAGATTACTTTAATTCATATGATAATCAAAATTTAGCATCATACATTTCAGAAGCTGTTAATTATTTTTTGAGCAATGTGAATAAGAGCGACAATTTTTAATCCTCATACAGATGCTACA  >  USA300TCH1516_ALE/2511547‑2511710

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑