Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2589902	2589965	64	2 [1]	[1] 2	gltB_2	Glutamate synthase [NADPH] large chain

ATTATCCCCAGAAAATAAATACTGACGTAATTCCGGTCCCATTTTTTCTGAAATATATCTAATACGTGCTAGTAAAGGATAATTCCTTAATACACTATGTTGTGATTGTCTTTTATCTTTAATTAACCAAATAAGCCCGATAACAATAACCGTAAGC  >  USA300TCH1516_ALE/2589950‑2590106                 |                                                                                                                                             aTTATCCCCAGAAAATAAATACTGACGTAATTCCGGTCCCATTTTTTCTGAAATATATCTAATACGTGCTAGTAAAGGATAATTCCTTAATACACTATGTTGTGATTGTCTTTTATCTTTAATTAACCAAATAAGCCCGAt                  >  1:54844/1‑141 (MQ=255)                 aaataCTGACGTAATTCCGGTCCCATTTTTTCTGAAATATATCTAATACGTGCTAGTAAAGGATAATTCCTTAATACACTATGTTGTGATTGTCTTTTATCTTTAATTAACCAAATAAGCCCGATAACAATAACCGTAAGc  >  1:20983/1‑141 (MQ=255)                 |                                                                                                                                             ATTATCCCCAGAAAATAAATACTGACGTAATTCCGGTCCCATTTTTTCTGAAATATATCTAATACGTGCTAGTAAAGGATAATTCCTTAATACACTATGTTGTGATTGTCTTTTATCTTTAATTAACCAAATAAGCCCGATAACAATAACCGTAAGC  >  USA300TCH1516_ALE/2589950‑2590106

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑