Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2597010	2597076	67	2 [1]	[1] 2	nikA_2	Nickel‑binding periplasmic protein

TCAATTCAACCGTGTACTTATCTTTAACTTTAACATTGTCAATTAATGTCGAAATCTTTAACCAAGAATGCAATTTTTTGTTTTCTTGAACTGCGTCAATATTTTTCTTAACTGCGTCAGCATCAAATGGCGTACCATCATGGAATTTAACGTCATCTCTC  >  USA300TCH1516_ALE/2597057‑2597217                     |                                                                                                                                             tcaattcaaCCGTGTACTTATCTTTAACTTTAACATTGTCAATTAATGTCGAAATCTTTAACCAAGAATGCAATTTTTTGTTTTCTTGAACTGCGTCAATATTTTTCTTAACTGCGTCAGCATCAAATGGCGTACcatcat                      <  1:8924/141‑1 (MQ=255)                     tCTTTAACTTTAACATTGTCAATTAATGTCGAAATCTTTAACCAAGAATGCAATTTTTTGTTTTCTTGAACTGCGTCAATATTTTTCTTAACTGCGTCAGCATCAAATGGCGTACCATCATGGAATTTAACGTCAtctctc  <  2:53392/141‑1 (MQ=255)                     |                                                                                                                                             TCAATTCAACCGTGTACTTATCTTTAACTTTAACATTGTCAATTAATGTCGAAATCTTTAACCAAGAATGCAATTTTTTGTTTTCTTGAACTGCGTCAATATTTTTCTTAACTGCGTCAGCATCAAATGGCGTACCATCATGGAATTTAACGTCATCTCTC  >  USA300TCH1516_ALE/2597057‑2597217

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑