Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2650927	2651034	108	2 [1]	[1] 2	USA300HOU_RS13635	hypothetical protein

TATTTTCTTAATACTTGTAGTATTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTC  >  USA300TCH1516_ALE/2651009‑2651175                           |                                                                                                                                             tATTTTCTTAATACTTGTAGTATTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTACTTCAAAATAATTTTCAAATCCCTTCACCTAAATAATGGTGCggggt                            >  2:58660/1‑140 (MQ=255)                           ttttCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTc  >  2:31947/1‑141 (MQ=255)                           |                                                                                                                                             TATTTTCTTAATACTTGTAGTATTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTC  >  USA300TCH1516_ALE/2651009‑2651175

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑