Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	53006	53197	192	2 [1]	[1] 2	[USA300HOU_RS00220]	[USA300HOU_RS00220]

GTACTATATATTTAGGAATTGAAGAAAAAAAGATCGAGGACAAAAAAGTCTTTGTTTCAGTTGGTGTTGAAGATCCAGAGAAAATGATTGAAGATTTTTGGAATGCACTATATGGAAGAAGTAAAGTTAGTCAAAATATTTTATCAAATAAAGATGTTAAAATTGTTAATATTGAA  >  USA300TCH1516_ALE/53163‑53338                                    |                                                                                                                                             gtACTATATATTTAGGAATTGAAGAAAAAACGATCGAGGACAAAAAAGTCTTTGTTTCAGTTGGTGTTGAAGATCCAGAGAAAATGATTGAAGATTTTTGGTATTTATTATATGGAAGAAGTAAAGTTAGTCAAAATAttt                                     >  2:58277/1‑141 (MQ=255)                                    gAGGACAAAAAAGTCTTTGTTTCAGTTGGTGTTGAAGATCCAGAGAAAATGATTGAAGATTTTTGGAATGCACTATATGGAAGAAGTAAAGTTAGTCAAAATATTTTATCAAATAAAGATGTTAAAATTGTTAATATTGaa  >  1:37299/1‑141 (MQ=255)                                    |                                                                                                                                             GTACTATATATTTAGGAATTGAAGAAAAAAAGATCGAGGACAAAAAAGTCTTTGTTTCAGTTGGTGTTGAAGATCCAGAGAAAATGATTGAAGATTTTTGGAATGCACTATATGGAAGAAGTAAAGTTAGTCAAAATATTTTATCAAATAAAGATGTTAAAATTGTTAATATTGAA  >  USA300TCH1516_ALE/53163‑53338

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑