Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2844229	2844411	183	2 [1]	[1] 2	ykoD_2	Putative HMP/thiamine import ATP‑binding protein YkoD

ATTACTATAGTCACTATATTGAACACATACCTCATTTAATTCTAATAGCGGTTCAGATTTGTACTTATTATCATTATTTGCAGATGTTTCATCTATCCATTTTTTCACTTTAAATTTAACATGTTCACTCATACAAACGTCACGTAAATTCGCTAAGTTATCAATGGATTCGACATCTACTTCTGCATATTTAA  >  USA300TCH1516_ALE/2844359‑2844552                                                      |                                                                                                                                             aTTACTATAGTCACTATATTGAACACATACCTCATTTAATTCTAATAGCGGTTCAGATTTGTACTTATTATCATTATTTGCAGATGTTTCATCTATCCATTTTTTCACTTTAAATTTAACATGTTCACTCATACAAACGTc                                                       >  1:8076/1‑141 (MQ=255)                                                      cAGATTTGTACTTATTATCATTATTTGCAGATGTTTCATCTATCCATTTTTTTTTTTTTTTTTTAACATGTTCACTCATACAAACGTCACGTATATTCGCTAAGTTATCAATGGATTCGACATCTACTTCTGCATATTTaa  >  2:13730/1‑141 (MQ=255)                                                      |                                                                                                                                             ATTACTATAGTCACTATATTGAACACATACCTCATTTAATTCTAATAGCGGTTCAGATTTGTACTTATTATCATTATTTGCAGATGTTTCATCTATCCATTTTTTCACTTTAAATTTAACATGTTCACTCATACAAACGTCACGTAAATTCGCTAAGTTATCAATGGATTCGACATCTACTTCTGCATATTTAA  >  USA300TCH1516_ALE/2844359‑2844552

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑