Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	2850976	2851002	27	2 [0]	[1] 2	USA300HOU_RS14605	hypothetical protein

CTGAAACTAAATTAAAAGTGTCTGGTTCTTTACTAAAGATAGCTGCTATCCTTGCTATCAAACTTGGCAATGAAATTACCAACACGATGAGCGCATAAATTTTCTGTTTAATTAAAATACAAGTTCCAATGAGCGCAATTAAAA  >  USA300TCH1516_ALE/2851000‑2851143    |                                                                                                                                             ctGAAACTAAATTAAAAGTGTCTGGTTCTTTACTAAAGATAGCTGCTATCCTTGCTATCAAACTTGGCAATGAAATTACCAACACGATGAGCGCATAAATTTTCTGTTTAATTAAAATACAAGTTCCAATGAGCGCAATTa     >  1:7159/1‑141 (MQ=255)    aaaCTAAATTAAAAGTGTCTGGTTCTTTACTAAAGATAGCTGCTATCCTTGCTATCAAACTTGGCAATGAAATTACCAACACGATGAGCGCATAAATTTTCTGTTTAATTAAAATACAAGTTCCAATGAGCGCAATTaaaa  >  1:50601/1‑141 (MQ=255)    |                                                                                                                                             CTGAAACTAAATTAAAAGTGTCTGGTTCTTTACTAAAGATAGCTGCTATCCTTGCTATCAAACTTGGCAATGAAATTACCAACACGATGAGCGCATAAATTTTCTGTTTAATTAAAATACAAGTTCCAATGAGCGCAATTAAAA  >  USA300TCH1516_ALE/2851000‑2851143

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑