Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	245554	245640	87	2 [1]	[1] 2	lytM_1	Glycyl‑glycine endopeptidase LytM

AGTTACCTGATGGGGAACGTAGCCTATATGATTTGTAGTTATAGAAGGGTGCCCGCAGTCTAAAAAATTAAGCAATCATTGTGTGAGTATGATACTTACATAATGGTTGCTTTTTTCAATGAAAATCGTAATGCTAAGTCATACTT  >  USA300TCH1516_ALE/245636‑245781      |                                                                                                                                             aGTTACCTGATGGGGAACGTAGCCTATATGATTTGTAGTTATAGAAGGGTGCCCGCAGTCTAAAAAATTAAGCAATCATTGTGTGAGTATGATACTTACATAATGGTTGCTTTTTTCAATGAAAATCGTAATGCTAAGTCa       >  1:39272/1‑141 (MQ=255)      ccTGATGGGGAACGTAGCCTATATGATTTGTAGTTATAGAAGGGTGCCCGCAGTCTAAAAAATTAAGCAATCATTGTGTGAGTATGATACTTACATAATGGTTGCTTTTTTCAATGAAAATCGTAATGCTAAGTCATACtt  <  2:26548/141‑1 (MQ=255)      |                                                                                                                                             AGTTACCTGATGGGGAACGTAGCCTATATGATTTGTAGTTATAGAAGGGTGCCCGCAGTCTAAAAAATTAAGCAATCATTGTGTGAGTATGATACTTACATAATGGTTGCTTTTTTCAATGAAAATCGTAATGCTAAGTCATACTT  >  USA300TCH1516_ALE/245636‑245781

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑