Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	416407	416420	14	2 [1]	[0] 2	ykuT	putative MscS family protein YkuT

TACAATTTCAGGAGAATTAACAATTTTACCAAATAGTAGTATGGGTGAAATAACGAACTACTCAATTACAAATGGTACAGCTATCGTTAAAATTCCAGTGTCTGTCGAAGAAAACATTGATAATGTTGATAAAAAACTAAA  >  USA300TCH1516_ALE/416421‑416561 |                                                                                                                                             tACAATTTCAGGAGAATTAACAATTTTACCAAATAGTAGTATGGGTGAAATAACGAACTTCTCAATTACAAATGGTACAGCTATCGTTAAAATTCCAGTGTCTGTCGAAGAAAACATTGATAATGTTGATAAAATACTaaa  <  2:62586/141‑1 (MQ=255) tACAATTTCAGGAGAATTAACAATTTTACCAAATAGTAGTATGGGTGAAATAACGAACTACTCAATTACAAATGGTACAGCTATCGTTAAAATTCCAGTGTCTGTCGAAGAAAACATTGATAATGTTGATAAAAAACTaaa  >  1:17785/1‑141 (MQ=255) |                                                                                                                                             TACAATTTCAGGAGAATTAACAATTTTACCAAATAGTAGTATGGGTGAAATAACGAACTACTCAATTACAAATGGTACAGCTATCGTTAAAATTCCAGTGTCTGTCGAAGAAAACATTGATAATGTTGATAAAAAACTAAA  >  USA300TCH1516_ALE/416421‑416561

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑