Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	468170	468201	32	2 [1]	[1] 2	USA300HOU_RS02220	putative lipoprotein

ATTTATTCGGCTAAATATCAATTACACAACGATGATTACAATGTAAGGCAACTACGTAAAAGATATGACATTTCAACAAAAGAAACACCGAAGTTACTTTTGAAAGGTGGAGGAGATTTAAAAAATTCCTCAGTTGGTCAAAACGATATTGAATTT  >  USA300TCH1516_ALE/468187‑468342                |                                                                                                                                             aTTTATTCGGCTAAATATCAATTACACAACGATGATTACAATGTAAGGCAACTACGTAAAAGATATGACATTTCAACAAAAGAAACACCGAAGTTACTTTTGAAAGGTGGAGGAGATTTAAAAAATTCCTCAGTTGGTCaa                 >  1:27304/1‑141 (MQ=255)                tatCAATTACACAACGATGATTACAATGTAAGGCAACTACGTAAAAGATATGACATTTCAACAAAAGAAACACCGAAGTTACTTTTGAAAGGTGGAGGAGATTTAAAAAATTCCTCAGTTGGTCAAAACGATATTGAAttt  <  1:4835/141‑1 (MQ=255)                |                                                                                                                                             ATTTATTCGGCTAAATATCAATTACACAACGATGATTACAATGTAAGGCAACTACGTAAAAGATATGACATTTCAACAAAAGAAACACCGAAGTTACTTTTGAAAGGTGGAGGAGATTTAAAAAATTCCTCAGTTGGTCAAAACGATATTGAATTT  >  USA300TCH1516_ALE/468187‑468342

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑