Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	566125	566217	93	2 [1]	[1] 2	nupC_2	Nucleoside permease NupC

TAAAATATATTCTCCTAGCATTTCGAAGAATGATTGTTGTCTTTCTTCAGTTTCTTCAACTAATAATTTGTCATCTTCTTCATTAACTTTATAAGGGTTAATAATTGAAGCGATGATGAAACCACCAAATAAGTTTAAGACAACAGCC  >  USA300TCH1516_ALE/566211‑566358        |                                                                                                                                             tAAAATATATTCTCCTAGCATTTCGAAGAATGATTGTTGTCTTTCTTCAGTTTCTTCAACTAATAATTTGTCATCTTCTTCATTAACTTTATAAGGGTTAATAATTGAAGCGATGATGAAACCACCAAATAAGTTTAAGac         >  1:59679/1‑141 (MQ=255)        tatTCTCCTAGCATTTCGAAGAATGATTGTTGTCTTTCTTCAGTTTCTTCAACTAATCATTTGTCATCTTCTTCATTAACTTTATAAGTGTTAATAATTGATGCGATGATGAAAACACCAAATAAGTTTAAGACAACAGcc  >  2:52159/1‑141 (MQ=255)        |                                                                                                                                             TAAAATATATTCTCCTAGCATTTCGAAGAATGATTGTTGTCTTTCTTCAGTTTCTTCAACTAATAATTTGTCATCTTCTTCATTAACTTTATAAGGGTTAATAATTGAAGCGATGATGAAACCACCAAATAAGTTTAAGACAACAGCC  >  USA300TCH1516_ALE/566211‑566358

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑