Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	567228	567376	149	2 [1]	[1] 2	ctsR	Transcriptional regulator CtsR

AAATTGAAAATAAAGATGCAACAGGTTATATTAATCATTTGCTTCAGCTGATTGGACCTTCTATTTCTCAACAACAAGCTTATTATATTATTGATGGGCTTTTAGATAAAATGTTAATAAATGAACGTGAAGCTAAAATGATTCAAGCAGTTATTGATAGAGAAACGCTATCAATGGATATGGTTTCTAGAGATATTA  >  USA300TCH1516_ALE/567320‑567517                                                          |                                                                                                                                             aaaTTGAAAATAAAGATGCAACAGGTTATATTAATCATTTGCTTCAGCTGATTGGACCTTCTATTTCTCAACAACAAGCTTATTATATTATTGATGGGCTTTTAGATAAAATGTTAATAAATGAACGTGAAGCTAAAATGa                                                           <  1:44843/141‑1 (MQ=255)                                                          cTTCTATTTCTCAACAACAAGCTTATTATATTATTGATGGGCTTTTAGATAAAATGTTAATAAATGAACGTGAAGCTAAAATGATTCAAGTAGTTATTGATAGAGAAACGCTATCAATGGATATGGTTTCTAGAGAtatta  <  2:45022/141‑1 (MQ=255)                                                          |                                                                                                                                             AAATTGAAAATAAAGATGCAACAGGTTATATTAATCATTTGCTTCAGCTGATTGGACCTTCTATTTCTCAACAACAAGCTTATTATATTATTGATGGGCTTTTAGATAAAATGTTAATAAATGAACGTGAAGCTAAAATGATTCAAGCAGTTATTGATAGAGAAACGCTATCAATGGATATGGTTTCTAGAGATATTA  >  USA300TCH1516_ALE/567320‑567517

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑