Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	571645	571712	68	2 [1]	[1] 2	clpC/radA	ATP‑dependent Clp protease ATP‑binding subunit ClpC/DNA repair protein RadA

AGTATCCATCAACGAAACAATCTAATAAAACAATCATCAAAGGATAGTTAAGAATTATATGTAACAAGTTAATGAGCCTACAGCGATAGCATAAAGGTATGAATTTTTATAAAGGTTTTTTGTTTGAAGATACTAGCAACTTACGTCAAAATAAAATAGG  >  USA300TCH1516_ALE/571694‑571853                    |                                                                                                                                             aGTATCCATCAACGAAACAATCTAATAAAACAATCATCAAAGGATAGTTAAGAATTATATGTAACAAGTTAATGAGCCTACAGCTATAGCATAAAGGTATGAATTTTTATAAAGGTTTTTTGTTTGAAGATACTAGCAACt                     <  2:59845/141‑1 (MQ=255)                    aTCTAATAAAACAATCATCAAAGGATAGTTAAGAATTATATGTAACAAGTTAATGAGCCTACAGCGATAGCATAAAGGTATGAATTTTTATAAAGGTTTTTTGTTTGAAGATACTAGCAACTTACGTCAAAATAAAATAgg  >  1:5386/1‑141 (MQ=255)                    |                                                                                                                                             AGTATCCATCAACGAAACAATCTAATAAAACAATCATCAAAGGATAGTTAAGAATTATATGTAACAAGTTAATGAGCCTACAGCGATAGCATAAAGGTATGAATTTTTATAAAGGTTTTTTGTTTGAAGATACTAGCAACTTACGTCAAAATAAAATAGG  >  USA300TCH1516_ALE/571694‑571853

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑