Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	USA300TCH1516_ALE	621138	621230	93	2 [1]	[1] 2	sdrE	Serine‑aspartate repeat‑containing protein E

TGGTTATTATAATTATGCAGGATATTCAAACTTCATCGTAACTTCTAATGACACTGGCGGTGGCGACGGTACTGTTAAACCTGAAGAAAAGTTATACAAAATTGGTGACTATGTATGGGAAGACGTTGATAAAGACGGTGTTCAAGGTACAGATTCAAAAGAAAAACCAATGGCAAACGTTTTAGTTACATTAACTTACCCGGACGG  >  USA300TCH1516_ALE/621165‑621371                                                                   |                                                                                                                                             tGGTTATTATAATTATGCAGGATATTCAAACTTCATCGTAACTTCTAATGACACTGGCGGTGGCGACGGTACTGTTAAACCTGAAGAAAAGTTATACAAAATTGGTGACTATGTATGGGAAGACGTTGATAAAGACGgtgt                                                                    >  1:64581/1‑141 (MQ=255)                                                                   cGGTACTGTTAAACCTGAAGAAAAGTTATACAAAATTGGTGACTATGTATGGGAAGACGTTGATAAAGACGGTGTTCAAGGTACAGATTCAAAAGAAAAACCAATGGCAAACGTTTTAGTTACATTAACTTACCCGGACgg  >  1:55635/1‑141 (MQ=255)                                                                   |                                                                                                                                             TGGTTATTATAATTATGCAGGATATTCAAACTTCATCGTAACTTCTAATGACACTGGCGGTGGCGACGGTACTGTTAAACCTGAAGAAAAGTTATACAAAATTGGTGACTATGTATGGGAAGACGTTGATAAAGACGGTGTTCAAGGTACAGATTCAAAAGAAAAACCAATGGCAAACGTTTTAGTTACATTAACTTACCCGGACGG  >  USA300TCH1516_ALE/621165‑621371

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑