New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1443583	98 (0.700)	5 (0.040)	3/248	NT	6.6%	intergenic (‑156/+197)	USA300TCH1516_01342/brnQ_3	hypothetical protein/Branched‑chain amino acid transport system 2 carrier protein
	?	USA300TCH1516_ALE	2317554 =	48 (0.360)					intergenic (+207/‑249)	iucC_3/USA300TCH1516_02193	Aerobactin synthase/hypothetical protein

ATGAGAGAATAATACATTTTCCATATTCAAATTATTAAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATAAGAC  >  USA300TCH1516_ALE/2317414‑2317692                                                                                                                                             |                                                                                                                                           aTGAGAGAATAATACATTTTCCATATTCAAATTATTAAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACt                                                                                                                                            <  2:786298/141‑1 (MQ=255)  tagtttagtagtatttattaaattatacgaagggatccaacacagaaaatttattttattgaattttacatttatgtgcaagttgggcaaagtgtcttatttttttaaagtatttcaaagtaaaattacacgttaatacta                                                                                                                                           <  1:541518‑M2/2‑2 (MQ=255)  tGAGAGAATAATACATTTTCCATATTCAAATTATTAAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACtt                                                                                                                                           <  3:138322/141‑1 (MQ=255)  tGAGAGAATAATACATTTTCCATATTCAAATTATTAAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTAGACAATACtt                                                                                                                                           <  1:1050027/141‑1 (MQ=255)    ttttagtagtatttattaaattatacgaagggatccaacacagaaattttattttattgaattttacatttatgtgcaagttgggaaaagtgtcttatttttttaaagtatttcaaagtaaaattacacgttaatactacg                                                                                                                                         <  4:196863‑M2/4‑4 (MQ=255)     gagaATAATACATTTTCCATATTCAAATTATTAAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGt                                                                                                                                        >  1:531356/1‑141 (MQ=255)     gagaATAAGGCAGTGTGCAGAGTCAAATTATTAAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTCCTGCTGTTCTCTATTTATACAATACTTCGt                                                                                                                                        <  2:1072207/141‑1 (MQ=17)     aagaATAATACATTTTCCATATTCAAATTATTAAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGt                                                                                                                                        <  2:381664/140‑1 (MQ=255)       gaATAATACATTTTCCATATTCAAATTATTAAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTAt                                                                                                                                      <  1:745677/141‑1 (MQ=255)         gtagtatttattaaattatacgaagggatccaacacagaaaatttattttattgaattttacatttatgtgcaagttgggcaaagtgtcttatttttttaaagtatttcaaagtaaaattacacgttaatacTACGTatta                                                                                                                                    >  2:366067‑M2/133‑140 (MQ=255)         ataataCATTTTCCATATTCAAATTATTAAAAATGACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACTATACTTCGTATTg                                                                                                                                    <  2:523918/141‑1 (MQ=255)         ataataCATTTTCCATATTCAAATTATTAAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTg                                                                                                                                    <  2:926911/141‑1 (MQ=255)           aataCATTTTCCATATTCAAATTATTAAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGaa                                                                                                                                  <  4:244275/141‑1 (MQ=255)               cATTTTCCATATTCAAATTATTAAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGc                                                                                                                              >  3:205579/1‑141 (MQ=255)               cATTTTCCATATTCAAATTATTAAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGc                                                                                                                              <  3:29461/141‑1 (MQ=255)                 ttttCCATATTCAAATTATTAAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCtt                                                                                                                            >  2:1020304/1‑141 (MQ=255)                    tCCATATTCAAATTATTAAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGc                                                                                                                         <  1:434130/141‑1 (MQ=255)                    tCCATATTCAAATTATTAAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGc                                                                                                                         <  4:44851/141‑1 (MQ=255)                     ccATATTCAAATTATTAAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCt                                                                                                                        >  1:322279/1‑141 (MQ=255)                      cATATTCAAATTATTAAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGt                                                                                                                                        >  2:875645/1‑124 (MQ=255)                      cATATTCAAATTATTAAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGt                                                                                                                                        <  1:875645/124‑1 (MQ=255)                      cATATTCAAATTATTAAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCtt                                                                                                                       >  2:352783/1‑141 (MQ=255)                      aaaatTCAAATTATTAAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCtt                                                                                                                       >  2:393685/4‑141 (MQ=255)                         atTCAAATTATTAAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTcc                                                                                                                    <  2:964270/141‑1 (MQ=255)                             aaaTTATTAAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAgg                                                                                                                <  2:317092/141‑1 (MQ=255)                              aaTTATTAAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAggg                                                                                                               >  4:308431/1‑141 (MQ=255)                                ttattaAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTg                                                                                                             >  2:615511/1‑141 (MQ=255)                                   ttaAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCg                                                                                                          >  4:304504/1‑141 (MQ=255)                                    taAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGt                                                                                                         <  2:1015793/141‑1 (MQ=255)                                    aaaaaaTCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGt                                                                                                         <  2:78778/140‑1 (MQ=255)                                     aaaaaTCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGtc                                                                                                        <  1:320454/141‑1 (MQ=255)                                      aaaaTCACAAAAAACAGGCTGGGACATACATCCCTAAAAAAACAGCACTAAGATAATTCTCACTTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGATGCCGtct                                                                                                       >  2:213737/1‑141 (MQ=14)                                       aaaTCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGtctc                                                                                                      >  3:227348/1‑141 (MQ=40)                                       aaaTCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGtctc                                                                                                      >  4:29185/1‑141 (MQ=40)                                          tCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTc                                                                                                                           >  4:438112/1‑117 (MQ=40)                                          tCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTc                                                                                                                           <  3:438112/117‑1 (MQ=40)                                            acaAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCt                                                                                                 >  3:254647/1‑141 (MQ=35)                                             caAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTc                                                                                                <  1:278207/141‑1 (MQ=35)                                             caAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTc                                                                                                >  4:268736/1‑141 (MQ=35)                                             caAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTc                                                                                                <  4:319380/141‑1 (MQ=34)                                             caAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTc                                                                                                >  1:562705/1‑141 (MQ=35)                                              aaaaaaCAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCg                                                                                               >  1:756437/1‑141 (MQ=34)                                               aaaaaCAGGCTGGGACATAAATCCCTAAGAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCgg                                                                                              <  4:460677/141‑1 (MQ=17)                                               aaaaaCAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCgg                                                                                              <  3:276575/141‑1 (MQ=32)                                               aaaaaCAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAAATAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCgg                                                                                              >  2:718321/1‑141 (MQ=18)                                                 aaaCAGGCTGAGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATAGCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGTCTCGGTc                                                                                            <  4:373628/141‑1 (MQ=12)                                                   aCAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCtt                                                                                          >  2:637693/1‑141 (MQ=32)                                                    cAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTc                                                                                         >  2:48386/1‑141 (MQ=32)                                                      ggCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGa                                                                                       >  4:14066/1‑141 (MQ=32)                                                       gCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGAc                                                                                      >  2:445713/1‑141 (MQ=31)                                                       gCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACGGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGAc                                                                                      >  2:944112/1‑141 (MQ=14)                                                        cTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACt                                                                                     >  1:389375/1‑141 (MQ=11)                                                                                    ttgggcaaagtgtcttatttttttaaagtatttcaaagtaaaattacatgttaatacGTAGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCAt                                                         <  2:1155817‑M2/84‑1 (MQ=255)                                                                                         caaagtgtcttatttttttaaagtatttcaaagtaaaattacatgttaatacTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAAta                                                    <  4:148831‑M2/89‑1 (MQ=255)                                                                                              tgtcttatttttttaaagtatttcaaagtaaaattacacgttaatacTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACg                                               <  1:949216‑M2/94‑1 (MQ=255)                                                                                                tcttatttttttaaagtatttcaaagtaaaattacacgttaatacTTCGTATTGAATGGCTTCGCTTTCCTTGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTa                                             <  1:813451‑M2/96‑1 (MQ=255)                                                                                                                               tATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACtttt              <  4:7673/141‑1 (MQ=11)                                                                                                                               tATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACtttt              <  4:143901/141‑1 (MQ=11)                                                                                                                               tATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACtttt              <  1:225699/141‑1 (MQ=11)                                                                                                                                aTTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTa             >  1:459252/1‑141 (MQ=31)                                                                                                                                aTTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTa             >  2:845619/1‑141 (MQ=31)                                                                                                                                aTTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTa             >  3:84712/1‑141 (MQ=31)                                                                                                                                 tttATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTaa            <  2:178081/141‑1 (MQ=32)                                                                                                                                 gcacatcAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTaa            <  3:197340/135‑1 (MQ=17)                                                                                                                                      aCAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAAt       >  2:1170515/1‑141 (MQ=32)                                                                                                                                       cAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATa      <  2:1008423/141‑1 (MQ=32)                                                                                                                                        aatacTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATaa     >  1:112955‑M2/6‑141 (MQ=255)                                                                                                                                        aatacTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATaa     >  2:902821‑M2/6‑141 (MQ=255)                                                                                                                                        aatacTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATaa     <  2:453052‑M2/136‑1 (MQ=255)                                                                                                                                         atacTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATAAg    <  2:605631‑M2/137‑1 (MQ=255)                                                                                                                                          tacTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGGCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATAAGa   >  4:283466‑M2/4‑141 (MQ=255)                                                                                                                                           acTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCgg                                                                                              >  2:388839‑M2/3‑49 (MQ=255)                                                                                                                                           acTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCgg                                                                                              <  1:388839‑M2/47‑1 (MQ=255)                                                                                                                                           acTTCGGATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATAAGac  <  2:33147‑M2/139‑1 (MQ=255)                                                                                                                                             |                                                                                                                                           ATGAGAGAATAATACATTTTCCATATTCAAATTATTAAAAATCACAAAAAACAGGCTGGGACATAAATCCCTAAAAAAACAGCAGTAAGATAATTTTCAATTAGAAAATATCTTACTGCTGTTCTCTATTTATACAATACTTCGTATTGAATGGCTTCGCTTTCCTAGGGTGCCGTCTCAGCCTCGGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATTAATACTACGTATTAACATGTAATTTTACTTTTACATACTTTTAAAAAATAAGAC  >  USA300TCH1516_ALE/2317414‑2317692

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.