BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2830190 =	143 (1.020)	3 (0.020)	3/236	NT	2.5%	intergenic (+18/+429)	icaC/lipA_2	putative poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein/Lipase 1
*	?	USA300TCH1516_ALE	2830247 =	100 (0.780)	3 (0.020)	3/236	NT	2.5%	intergenic (+75/+372)	icaC/lipA_2	putative poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein/Lipase 1
Rejected: Frequency below/above cutoff threshold.

Only 100 of 144 total aligned reads displayed.

GAATTCTATATCTTTAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTGACTTTCCGCCAG  >  USA300TCH1516_ALE/2830107‑2830387

gAATTCTATATCTTTAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTa                                                                                                                                              <  3:203958/141‑1 (MQ=255)

 aaTTCTATATCTTTAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTaa                                                                                                                                             >  1:1001938/1‑141 (MQ=255)

     cTATATCTTTAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATAtt                                                                                                                                         <  1:466476/141‑1 (MQ=255)

     cTATATCTTTAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCACGTGTTTAATAtt                                                                                                                                         >  2:836290/1‑141 (MQ=255)

      tataTCTTTAGGTTTATTATTGGAAAACAAACATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTg                                                                                                                                        <  2:854629/141‑1 (MQ=255)

         atCTTTAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTta                                                                                                                                     >  2:725591/1‑141 (MQ=255)

         atCTTTAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACAAGGGGTAGGCGCACTGAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTta                                                                                                                                     >  1:109833/1‑141 (MQ=255)

           ttttAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTtata                                                                                                                                   <  2:236236/140‑1 (MQ=255)

              tAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACat                                                                                                                                >  2:953675/1‑141 (MQ=255)

               aGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACata                                                                                                                               >  1:543992/1‑141 (MQ=255)

               aGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACata                                                                                                                               <  2:1181397/141‑1 (MQ=255)

                ggTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACatat                                                                                                                              <  4:292275/141‑1 (MQ=255)

                ggTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACatat                                                                                                                              <  2:373834/141‑1 (MQ=255)

                ggTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACatat                                                                                                                              <  1:381288/141‑1 (MQ=255)

                 gTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACatata                                                                                                                             <  2:907073/141‑1 (MQ=255)

                 gTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACatata                                                                                                                             >  1:723489/1‑141 (MQ=255)

                 gTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACatata                                                                                                                             <  2:906956/141‑1 (MQ=255)

                  tttATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACatatat                                                                                                                            <  1:806341/141‑1 (MQ=255)

                   ttattaTTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATAtt                                                                                                                           >  1:468578/1‑141 (MQ=255)

                      ttattGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTa                                                                                                                        >  1:187482/1‑141 (MQ=255)

                         ttGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAAtt                                                                                                                     <  1:134186/141‑1 (MQ=255)

                          tGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTg                                                                                                                    >  2:335887/1‑141 (MQ=255)

                          tGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCAAAAACAGTCTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTg                                                                                                                    >  3:121760/1‑141 (MQ=255)

                           ggAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGc                                                                                                                   <  2:682978/141‑1 (MQ=255)

                            gAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGca                                                                                                                  >  3:375664/1‑141 (MQ=255)

                            gAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGca                                                                                                                  >  4:458960/1‑141 (MQ=255)

                               aacaacCATCTAAATTGAACCTTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGCCAGAATTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTACTTGCACAt                                                                                                               <  2:1010064/141‑1 (MQ=255)

                               aacaacCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACAt                                                                                                               <  2:169069/141‑1 (MQ=255)

                               aacaacCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACAt                                                                                                               <  1:1089083/141‑1 (MQ=255)

                                acaacCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACAtt                                                                                                              <  1:593541/141‑1 (MQ=255)

                                 caacCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACAttt                                                                                                             <  2:104847/141‑1 (MQ=255)

                                   acCATAAAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCTGTGGGAGAAAACGGTTTGAATGGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATATATATATTCTAATTGCAAATTTaa                                                                                                           >  2:568240/1‑141 (MQ=255)

                                     cATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAAc                                                                                                         <  1:672688/141‑1 (MQ=255)

                                     cATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAAc                                                                                                         >  1:1065880/1‑141 (MQ=255)

                                     cATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAAc                                                                                                         >  1:932995/1‑141 (MQ=255)

                                          aaaTTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGt                                                                                                    >  2:288392/1‑141 (MQ=255)

                                             ttGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTaaa                                                                                                 <  1:584592/141‑1 (MQ=255)

                                                 aCATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGcc                                                                                             <  2:382801/141‑1 (MQ=255)

                                                 aCATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGcc                                                                                             >  1:1001530/1‑141 (MQ=255)

                                                  cATTAATGCTTATTAATTATTAAGCTATGTTAAAAACGCGCGGTGGGCGAGATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATCTATTCTAATTGCACATTTACACTTCGTAAATGCCa                                                                                            <  4:240834/141‑1 (MQ=255)

                                                  cATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGTGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCa                                                                                            <  2:692850/141‑1 (MQ=255)

                                                  cATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCa                                                                                            <  4:310564/141‑1 (MQ=255)

                                                  cATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGAATGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATGCTAATTGCACATTTAAACTTCGTAAATGCCa                                                                                            <  2:409398/141‑1 (MQ=255)

                                                   aTTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCaa                                                                                           <  2:4326/141‑1 (MQ=255)

                                                   aTTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCaa                                                                                           <  1:903775/141‑1 (MQ=255)

                                                   aTTAATGCTTATTAATTATTAAGCTATATTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTTTTTAATAATGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCaa                                                                                           <  2:1070384/141‑1 (MQ=255)

                                                     tAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATg                                                                                         <  4:125713/141‑1 (MQ=255)

                                                     tAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATGGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATg                                                                                         <  1:341621/141‑1 (MQ=255)

                                                       gcaattagaatatatgtataacaatattaaacacgcggtaaaacgaagtcagtcaattcaaactgatttcgcccaccgcgtgtttAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATggg                                                                                       >  1:1033338‑M2/86‑141 (MQ=255)

                                                       aTGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATggg                                                                                       >  1:1085144/1‑141 (MQ=255)

                                                        tGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGa                                                                                      >  1:395708/1‑141 (MQ=255)

                                                         gCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAg                                                                                     <  2:703614/141‑1 (MQ=255)

                                                            tattaattattaaGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTgg                                                                                  >  1:1030704/1‑141 (MQ=255)

                                                              ttaattattaaGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGa                                                                                >  4:17720/1‑141 (MQ=255)

                                                               taattattaaGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGAc                                                                               <  3:216247/141‑1 (MQ=255)

                                                                    attaaGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGaaa                                                                          <  1:445970/141‑1 (MQ=255)

                                                                         gCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGata                                                                     >  4:493008/1‑141 (MQ=255)

                                                                                tAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGc                                                              >  1:543685/1‑141 (MQ=255)

                                                                                 aaaaaCACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCa                                                             >  2:544272/1‑141 (MQ=255)

                                                                                 aaaaaCACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCa                                                             >  1:277157/1‑141 (MQ=255)

                                                                                   AAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCaaa                                                           >  1:251398‑M1/1‑141 (MQ=255)

                                                                                    AACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCaaaa                                                          <  1:649653‑M1/141‑1 (MQ=255)

                                                                                       agGCGGTGGGCGAAAGCAGTTTGAATTGACTGACTTCGTGTGACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGAAACAGAAATGATATTTTCGCAAAattt                                                       >  4:262886‑M1/3‑141 (MQ=255)

                                                                                       ACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAattt                                                       >  4:390361‑M1/1‑141 (MQ=255)

                                                                                       ACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAattt                                                       >  2:116071‑M1/1‑141 (MQ=255)

                                                                                       ACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAattt                                                       <  3:486114‑M1/141‑1 (MQ=255)

                                                                                        CGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAattta                                                      >  3:65813‑M1/1‑141 (MQ=255)

                                                                                         GCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAatttat                                                     <  1:1096695‑M1/141‑1 (MQ=255)

                                                                                          CGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATTGGAGTGGGACAGAAATGATATTTTCGCAAAatttatt                                                    >  1:861914‑M1/1‑141 (MQ=255)

                                                                                          CGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAatttatt                                                    >  1:861861‑M1/1‑141 (MQ=255)

                                                                                            GTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCGAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTc                                                  <  1:979888‑M1/141‑1 (MQ=255)

                                                                                             TGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCg                                                 >  2:1055335‑M1/1‑141 (MQ=255)

                                                                                             TGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCg                                                 >  3:451351‑M1/1‑141 (MQ=255)

                                                                                               aaacgaagtcagtcaattcaaactgatttcgcccaccgcgtgtttAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTtcgtc                                               >  1:710313‑M2/46‑141 (MQ=255)

                                                                                                   aaaTCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTcc                                           >  2:498592/1‑141 (MQ=255)

                                                                                                     aTCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCa                                         <  2:181911/141‑1 (MQ=255)

                                                                                                      tCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCAc                                        <  2:312478/141‑1 (MQ=255)

                                                                                                        aGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCAccc                                      >  2:266442/1‑141 (MQ=255)

                                                                                                        aGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCAccc                                      <  2:865382/141‑1 (MQ=255)

                                                                                                          tttGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTACACTTCGTAATTGTTAATGGGCGCGCGCGAGACCTGATCTTTTAGCCTCATTTCTTTCGTCCTCTCACcaca                                    >  1:891491/1‑141 (MQ=255)

                                                                                                             gAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACt                                 <  1:284269/141‑1 (MQ=255)

                                                                                                                  gactgactTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGcac                            <  2:336841/141‑1 (MQ=255)

                                                                                                                   actgactTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGcaca                           <  2:1001938/141‑1 (MQ=255)

                                                                                                                   actgactTCGTTTTACCGCGTGTTTAATAATGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTC‑T‑GTCCCACCCCAACTTGcattgt                         >  4:260952/1‑137 (MQ=37)

                                                                                                                     tgactTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAGACTTCTTAAATGCGAATTGTAGTGGTACAGAAGTGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACatt                         >  1:114224/1‑141 (MQ=37)

                                                                                                                      gactTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACatta                        >  2:240543/1‑141 (MQ=255)

                                                                                                                              tttACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAAcc                <  1:129716/141‑1 (MQ=255)

                                                                                                                              tttACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAAcc                <  2:1030704/141‑1 (MQ=255)

                                                                                                                              tttACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGAAATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAAcc                >  2:949914/1‑141 (MQ=255)

                                                                                                                                tACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTg              <  1:376776/141‑1 (MQ=255)

                                                                                                                                  ccgcgtgtttAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTGAc            <  2:611140‑M2/131‑1 (MQ=255)

                                                                                                                                  ccgcgtgtttAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTGAc            <  1:250946‑M2/131‑1 (MQ=255)

                                                                                                                                  ccgcgtgtttAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATCGTAACCTGAc            >  1:152229‑M2/11‑141 (MQ=255)

                                                                                                                                     cgtgtttAATATTGTTATACATATATTCTACTTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTGACttt         <  1:941848‑M2/134‑1 (MQ=255)

                                                                                                                                     cgtgtttAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTGACttt         <  2:726384‑M2/134‑1 (MQ=255)

                                                                                                                                     cgtgtttAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTGACttt         >  3:222442‑M2/8‑141 (MQ=255)

                                                                                                                                       tgtttAATATTGTTATACATATGTTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTGCCTTTcc       >  2:139776‑M2/6‑141 (MQ=255)

                                                                                                                                          ttAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTGACTTTCCGcc    <  1:544272‑M2/139‑1 (MQ=255)

                                                                                                                                          ttAATATTGTTATACATATATTCTAACTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTGACTTTCCGcc    <  4:386103‑M2/139‑1 (MQ=255)

                                                                                                                                            aaTATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTGACTTTCCGCCAg  >  3:115387/1‑141 (MQ=255)

GAATTCTATATCTTTAGGTTTATTATTGGAAAACAACCATATAAATTGAACATTAATGCTTATTAATTATTAAGCTATGTTAAAAACACGCGGTGGGCGAAATCAGTTTGAATTGACTGACTTCGTTTTACCGCGTGTTTAATATTGTTATACATATATTCTAATTGCACATTTAAACTTCGTAAATGCCAATGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACATTATTGTAACCTGACTTTCCGCCAG  >  USA300TCH1516_ALE/2830107‑2830387

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.