| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 517640 | NA (NA) | 6 (0.060) | 5/284 | 7.7 | NA | intergenic (+5708/‑1055) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
| ? | USA300TCH1516_ALE | = 517643 | NA (NA) | intergenic (+5711/‑1052) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
AGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGATGATGAGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAATCAAAATAAATGTTTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/517488‑517640‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttgcTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGAACCTATTAACCTCATCATCTTTGAGGGATCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGC < USA300TCH1516_ALE/517643‑517496 AGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCTGTTATAAGATCCCTCAAAGATGATGGGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAGTCAAAATAAATGTT > 1:459764/1‑149AGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGATGATGAGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAATCAAAATAAATGTT > 1:776986/1‑149AGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGATGATGAGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAATCAAAATAAATGTT > 1:1056248/1‑149AGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGATGATGAGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAATCAAAATAAATGTT > 1:1016616/1‑149 GCATGGAGCCCCCCTCAAGATGCGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGATGATGAGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAATCAAAATAAATGTTT > 2:679804/1‑149 GCATGAAGCCCCCCTCGAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGACGATGAGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAATCAAAATAAATGTTT > 2:822479/1‑149 GCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGATGATGGGGTTAATAGGTTCGAGGTGGAAGCGTGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAATCAAAATAAATGTTT > 2:607706/1‑149 GCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGATGATGAGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTTGAGCTGACGAATACTAATCGATCGAAGACTTAATCAAAATAAATGTTT > 2:281549/1‑149 GCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGATGATGAGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCGATCGACGACTTAATCAAAATAAATGTTT > 2:481659/1‑149 GCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGATGATGAGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTGATCAAAATAAATGTTT > 2:357897/1‑149 GCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGATGATGAGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAATCAAAATAAATGTTT > 1:1020939/1‑149 GCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGATGATGAGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAATCAAAATAAATGTTT > 1:835023/1‑149 GCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGATGATGAGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAATCAAAATAAATGTTT > 2:262823/1‑149 GCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGATGATGAGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAATCAAAATAAATGTTT > 1:262548/1‑149 GCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGATGATGAGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAATCAAAATAAATGTTT > 1:1061856/1‑149 GCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGATGATGAGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAAGCAAAATAAATGTTT > 2:838398/1‑149 GCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGATGATGAGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATAATAATCGATAGAAGACTCAATCCAAATGAATGTTT > 2:1112527/1‑149 GCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGATGATGAGGTTAAGAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAATCAAAATAAATGTTT > 2:341791/1‑149 GCATGAAGCCCCCCTCAAGATGAGAGTTCCCAACTTCGGTTATAAGATCCCTCAAAGATGATGAGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAATCAAAATAAATGTTT < 1:252512/149‑1 GCATGAAGCCCCCCTAAAGAAGAGATTTCCCAACTTCTGTTAGAAGGTCCCTCAAAGTTGATGAGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAATCAAAATAAATGTTT > 2:1101032/1‑149 ccTGAAGCCCCCCTCCAGATGAGCTCTCCCAACTTCGGTTATAAGACCCCTCGAAGATGATGAGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAATCAAAATAAATGTTTT < 2:39288/147‑1 CATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGATGATGAGGTTACTAGGTTCGGGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAATCAAAATAAATGTTTT > 1:289430/1‑149 CATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGATGATGAGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTACTCGATCGAAGACTTAATCAAAATAAATGGTTT > 2:454897/1‑149 CATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGATGATGAGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAATCAAAATAAATGTTTT < 1:141404/149‑1 CATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGATGATGAGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAATCAAAATAAATGTTTT > 1:861783/1‑149 CATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGATGATGAGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAATCAAAATAAATGTTTT < 1:826531/149‑1 CATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGATGATGAGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAATCAAAATAAATGTTTT > 1:752612/1‑149 CATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGATGATGAGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAATAAACATAAATGTTTT > 2:396271/1‑149 CATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGATGATGAGGTTAATAGGATCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATAGATCGAAGACTTAATCAAAATAAATGTTTT > 2:2769/1‑149 CATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTAGAAGATCCCTCAAAGATGATGAGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAATCAAAATCAATGTTTT > 1:230475/1‑149 CATGAAGCCCCCCTCAAGATGAGATTTCCAAACTTCGGTTATAAGATCCCTCAAAGATGATGAGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGAAGAAAACCAATCGATCGAAGACTTAATCAAAATAAATGTTTT > 1:581305/1‑149 atcaacCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGATGATGAGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGACTAGTAAGCGTTCGAAGACTTAATCAAAATAAATGTTTTG < 2:1071141/143‑1 atcAAGCCCCCCCCAAGAAGAGATTTCCCAACTTCGGTTAGAAGATCCCCCAAAGATGATGAGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAATCAAAATAAATGTTTTG < 1:134458/146‑1 acGAAGCCCCCCTCCATATGAGTTTTGCCAACTTCGGTTATAAGATCCCTCAAAGATGATGAGGTTAATAGGTTCGAGGTAGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAATCAAAATAAATGTTTTG < 2:930232/147‑1 ATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGATGATGAGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCTATCGAAGACTTAATAAAAATAAAAGTTTTG > 2:544962/1‑149 ATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGATGATGAGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAATCAAAATAAATGTTTTG > 1:53576/1‑149 ATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGATGATGAGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAATCAAAATAAATGTTTTG > 1:935523/1‑149 TGAAGCCCCCCTTAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGATGATGGGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAATCAAAATAAATGTTTTGC < 1:413180/149‑1 TGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGATGATGAGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAATCAAAATAAATGTTTTGC < 1:769415/149‑1 CCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGATGATGAGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATGGGTCGAAGACTTAATCAAAATAAATGTTTTGCaaaaca > 1:373501/1‑143 cagGATGAGGTTGCCCAAGTTCGGTTATAAGAGCCCTCAAAGGTGATGGGGTTAAGAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAATCAAAATAAATGTTTTGCTTCGCAAAACAT < 2:74594/146‑1 TGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGATGATGAGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAATCAAAATAAATGTTTTGCTTCGCAAAACATTTATT < 1:562523/149‑1 AAGACCCCTAAAAGATGATGAGGTTAATAGGTTCGAGGTGGAAGCAAGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAATCAAAATAAATGTTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTA < 2:45122/149‑1 CAAGGATGAGGGGGTTAATAGGTTCGAGCTAGAAGGATGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAATCAAAATAAATGTTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGac < 2:848640/149‑3 CAAAGATGATGAGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAATCAACATATCTGTTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTC < 1:492082/149‑1 AGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAATCAAAATAAATGTTTTGCTTCGCAAAATATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATG < 2:733819/149‑1 TTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCCGCTCCACATGTCACCATGCTTCCACCTCGAACCTATTAACCTCATCATCTTTGAGGGATCTTATAACCGAAGTTGGGAAATCTCATCTTGAGG < 2:303947/149‑1 TTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGAACCTATTAACCTCATCATCTTTGAGGGATCTTATAACCGAAGTTGGGAAATCTCATCTTGAGG < 2:67749/149‑1 TTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGAACCTATTAACCTCATCATCTTTGAGGGATCTTATAACCGAAGTTGGGAAATCTCATCTTGAGG < 1:122855/149‑1 TTTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGAACCTATTAACCTCATCATCTTTGAGGGATCTTATAACCGAAGTTGGGAAATCTCATCTTGAGG < 2:198618/149‑1 TTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGAACCTATTAACCTCATCATCTTTGAGGGATCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGG > 1:19883/1‑149 TTTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGAACCTATTAACCTCATCATCTTTGAGGGATCTTATAACCGAAGTAGGGAAATCTCATTTTGAGGG > 2:608413/1‑149 TTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGAACCTATTAACCTCATCATCTTTGAGGGATCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGG > 1:432760/1‑149 TTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGAACCTATTAACCTCATCATCTTTGAGGGATCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGG < 1:332917/149‑1 TTGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCACGAAGCTATTAACCTCATCATCTTTGAGGGATCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGG > 2:952740/1‑149 TGCTTCGGAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGAACCTATTAACCTCATCATCTTTGAGGGATCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGG < 2:392719/149‑1 TGCTTCGCACAACTTTTACTTTGATTAAGTCTTCGATCGATCAGTATTCGTCAGCTCCACATGGCACCATGCTTCCACCGCGAACCTATTAACCTCATCATCTTTGAGGGATCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGG < 2:610113/149‑1 TGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCCGCTCCACATGTCACCATGCTTCCACCTCGAACCTATTAACCTCATCATCTTTGAGGGATCTTATAACTGAAGTTGGGAAATCTCATCTTGAGGGGG > 1:633631/1‑149 TGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCCCCATGCTTCCACCTCGAACCTATTAACCTCATCATCTTTGAGGGATCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGG > 1:505073/1‑149 TGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGAACCTATTAACCTCATCATCTTTGAGGGATCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGG > 1:959343/1‑149 TGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGAACCTATTAACCTCATCATCTTTGAGGGATCTTATAACCGAAGTTGGGAAATCCCATCTTGAGGGGG > 2:577139/1‑149 TGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTACACCTCTAACCTATTAACCTCATCATCTTTGAGGGATCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGG > 2:399288/1‑149 TGCTTCGCAAAACATTTATTTTGATTAAGTCTTCGAGCTATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGAACCTATTAACCTCATCATCTTTGAGGGATCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGG < 2:609576/149‑1 TGCTGCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGAACCTATTAACCTCATCATCTTTGAGGGATCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGG < 2:91554/149‑1 GCTTCGCAAAACATTTATTTTGATTACGTCCTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGGTTCCACCTCGAACCTATGAACCTCATCATCTTTGAGGGATCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGG < 2:649427/149‑1 GCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTTCACATGTCACCATGCTTCCACCTCGAACCTATTAACCTCATCATCTTTGAGGGATCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGG > 2:723895/1‑149 GCTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCCCCTCGAACCTATTAACCTCATCATCTTTGAGGGATCTTATAACCGAAGTTGTGAAATCTCCACCTGAGGGGGG > 2:729367/1‑149 GCTTCGAAAAACACTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGAACCTATTAACCTCATCATCTTTGAGGGATCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGG < 2:576427/149‑1 CTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGAACCTATTAACCTCATCATCTTTGAGGGATCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGC > 1:882668/1‑149 CTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGAACCTATTAACCTCATCATCTTTGAGGGATCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGC < 1:1025558/149‑1 CTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGAACCTATTAACCTCATCATCTTTGAGGGATCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGC < 2:302547/149‑1 CTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTAACCATGCTTCCACCTCGAACCTATTAACCTCATCATCTTTGAGGGATCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGC > 1:745024/1‑149 CTTCGCAAAACATTTATTTTGATTAAGTATTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCCTGCTTCCACCTCGAACCTATTAACCTCATCATCTTTGAGGGATCTTACAACCGAAGTTGGGAAATCACATCTTGAGGGGGGC > 1:678133/1‑149 AGCATGAAGCCCCCCTCAAGATGAGATTTCCCAACTTCGGTTATAAGATCCCTCAAAGATGATGAGGTTAATAGGTTCGAGGTGGAAGCATGGTGACATGTGGAGCTGACGAATACTAATCGATCGAAGACTTAATCAAAATAAATGTTTTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/517488‑517640‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttttgcTTCGCAAAACATTTATTTTGATTAAGTCTTCGATCGATTAGTATTCGTCAGCTCCACATGTCACCATGCTTCCACCTCGAACCTATTAACCTCATCATCTTTGAGGGATCTTATAACCGAAGTTGGGAAATCTCATCTTGAGGGGGGC < USA300TCH1516_ALE/517643‑517496 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |