| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | CP000731 | 6,552 | +TCTCCAGGCACTTGTGCATATTCTGAAA | 100% | intergenic (+1069/‑419) | cadX → / → USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000731 | = 6552 | 0 (0.000) | 49 (0.830) +TCTCCAGGCACTTGTGCATATTCTGAAA |
38/204 | NT | 100% | intergenic (+1069/‑419) | cadX/USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator |
| ? | CP000731 | 6553 = | 0 (0.000) | intergenic (+1070/‑418) | cadX/USA300HOU_pUSA300HOUMR0010 | cadmium efflux regulator/MarR family transcriptional regulator | |||||
CTAAAATTTCAGGTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATAATCTCTAATTACACCGC > CP000731/6416‑6693 | cattccatatttttctagttcaaaaattgataatgctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATcc > 1:211962‑M2/138‑141 (MQ=255) ttccatatttttctagttcaaaaattgataatgctgccgtaaaaccggctgtgccatataccatagactctttaatagacaggtctggcgtaatagtgacaatccactctccaggcccttgtgaatattcggacaatcccc > 1:121380‑M2/136‑139 (MQ=255) ttttctagttcaaaaattgataatgctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTAtgt < 2:172200‑M2/14‑1 (MQ=255) tttctagttcacaaactgataatgctgccgtaaacccggctgtgcaatatcccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTAtgtg < 1:262012‑M2/15‑1 (MQ=255) agttcaaaaattgataatgctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACg < 2:310030‑M2/20‑1 (MQ=255) caaaaacttacaatgctgccgtaaaaccggctgtgccatataccatacactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCaa < 2:219141‑M2/24‑1 (MQ=255) aattgataatgctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAAcatc > 2:174541‑M2/114‑141 (MQ=255) attgataatgctgccgtaaaaccggctgtgccatatatcagagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAAcatca < 2:77258‑M2/29‑1 (MQ=255) ttgatgctgctgccttgaaaccggcggtcccatatagcagaggctctttgatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgacaATCCACCTGTATGTGTCACGCCAAcatcat < 1:194377‑M2/30‑1 (MQ=255) tgataatgctgccgtaaaaccggctgtgccatataccatagactctttaagagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATa < 1:141675‑M2/31‑1 (MQ=255) taatgctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAAcc > 2:283926‑M2/108‑141 (MQ=255) taatgctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAAcc > 1:264644‑M2/108‑141 (MQ=255) atgctgccgtacaaccggctgtgccatatatcatcgactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAg < 2:252525‑M2/36‑1 (MQ=255) atgctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAg > 1:44869‑M2/106‑141 (MQ=255) gctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACcagga > 2:169192‑M2/104‑139 (MQ=255) gctgccgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTa > 1:337186‑M2/104‑141 (MQ=255) cgtaaaaccggctgtgccatataccatagactctttaatagccatttcttgaggagtaggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTaa > 2:359968‑M2/99‑141 (MQ=255) cgtaaaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGGGTCACGCCAACATCATAACCAGTAACTaa > 2:360079‑M2/99‑141 (MQ=255) aaaccggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATact > 2:207053‑M2/95‑140 (MQ=255) accggctgtcccaaataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACAtt < 1:17728‑M2/49‑1 (MQ=255) cggctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTAt > 1:100731‑M2/91‑141 (MQ=255) ctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACAttattgc < 2:211962‑M2/54‑4 (MQ=255) ctgtgccatataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGc > 1:71913‑M2/88‑141 (MQ=255) catataccatagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCcttctt > 1:338032‑M2/82‑141 (MQ=255) taccatagcctccttcagacacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCCCCTGTATGTTTCACGCCAACATCACAACCAGTAACTAATACATTATCGCCTTCTTTaaa < 1:170331‑M2/64‑1 (MQ=255) atagactctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTa > 1:345258‑M2/74‑141 (MQ=255) atagactctttaatagacatttcttggggaagaggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTa < 2:307917‑M2/68‑1 (MQ=255) acaccctttaatagaccttacttggggaataggaacaatccactctccaggcaattgcgcatagtctgaaaATCCACCTGTATGTGTCACGCCAACATCACAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATc < 2:22384‑M2/70‑1 (MQ=255) actctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTACTACATTATCGCCTTCTTTAAGCTTATCAt > 1:286535‑M2/70‑141 (MQ=255) actctttaatagacatttcctggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGTCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCAt < 1:124870‑M2/72‑1 (MQ=255) ctctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCAtt < 1:19912‑M2/73‑1 (MQ=255) ctctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCAt > 2:368575‑M2/69‑140 (MQ=255) ctctttaatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCAt < 1:368575‑M2/72‑1 (MQ=255) taatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGGCTTCTTTAAACTTATCATTCGAAc < 2:264644‑M2/78‑1 (MQ=255) aatagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACt < 1:164190‑M2/79‑1 (MQ=255) atagacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACtt < 2:372722‑M2/80‑1 (MQ=255) gacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGAt > 1:348178‑M2/59‑141 (MQ=255) gacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGAt > 1:339136‑M2/59‑141 (MQ=255) gacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGAt > 2:223123‑M2/59‑141 (MQ=255) gacatttcttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGAt > 1:244601‑M2/59‑141 (MQ=255) cacatctcctgagcaatagcaacaatccaccctccatgcacttgtgcatattctgaaaATCCACCTGTATGTGTCATGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGAt < 1:21949‑M2/83‑1 (MQ=255) cttggggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTcaacaa > 1:111969‑M2/52‑141 (MQ=255) ggtgaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATAc < 1:321714‑M2/93‑1 (MQ=255) gggaataggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATAcc < 2:339136‑M2/94‑1 (MQ=255) gggaacaggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATAcc < 2:158917‑M2/94‑1 (MQ=255) aagtaacaatccactctccaggcatttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCACAACCAGTAACTAATACAGTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCaa < 1:41598‑M2/99‑1 (MQ=255) aggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCaaa > 1:31656‑M2/42‑141 (MQ=255) aggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCaaa > 2:118098‑M2/42‑141 (MQ=255) aggaacaatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATAATTCGAACTTGATTCAACAATACCTGCaaa > 1:232862‑M2/42‑141 (MQ=255) caatccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCta > 2:210273‑M2/37‑141 (MQ=255) atccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAAGACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCtata < 1:45765‑M2/107‑1 (MQ=255) tcccctttccaggcacttgtgcatattccgaaaATCCACCTGTATTTGCCTCGCCAACATCATAACCAGTAACTACTACATTATCGCCTTCTTTAAACTTATCATTCGAACTGGCTTAAACACTACCTGCAAAATCTATAc < 2:184287‑M2/108‑1 (MQ=255) ccactctccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATAcc < 1:174541‑M2/109‑1 (MQ=255) cactctccaggcacttttgcatattctgaaaAGCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCa < 2:31170‑M2/110‑1 (MQ=255) ccaggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATc > 1:194834‑M2/26‑141 (MQ=255) cgggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATATATACCAGGaataa > 2:10522‑M2/25‑139 (MQ=255) caggcacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCa > 1:326732‑M2/25‑141 (MQ=255) cacttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTAAACCATACCTGCAAAATCTATACCAGGAATCATAgg < 1:179682‑M2/121‑1 (MQ=255) ttgtgcatattctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATa < 2:240867‑M2/124‑1 (MQ=255) ttctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATAATCActact > 2:75855‑M2/9‑139 (MQ=255) tctgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTACCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATAATCTCTAAtt < 2:57201‑M2/134‑1 (MQ=255) tgaaaATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAACACCTGCAAAATCTATACCAGGAATCATAGGATAATCTCTAATTac < 2:199539‑M2/136‑1 (MQ=255) gaaaAACCACCTGTATGTGTCCTGCCCACTTGATAACCAGTAACTAATACATTATCGCCTTCTTTAGACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATAATCTCTAATTaca > 1:274507‑M2/5‑141 (MQ=255) aaaATCCACCGGTATGTGTCACGCCAACATCATAACCAGGAACTAATACATTATCGCCTGCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATAATCTCTAATTacac < 2:348743‑M2/138‑1 (MQ=255) aaATCCACCTGTATGTGTCACGCCAACCTCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAAGACCTGCAAAATCTATACCAGGAATCATAGGATAATCTCTAATTACAcc < 2:161464‑M2/139‑1 (MQ=255) atccacCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATAATCTCTAATTACACCGc < 2:314429/141‑1 (MQ=255) atccacCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATAATACCTAATTACACCGc > 2:135963/1‑141 (MQ=255) | CTAAAATTTCAGGTTGTGATTTGATATTCATTCCATATTTTTCTAGTTCAAAAATTGATAATGCTGCCGTAAAACCGGCTGTGCCATATACCATAGACTCTTTAATAGACATTTCTTGGGGAATAGGAACAATCCACATCCACCTGTATGTGTCACGCCAACATCATAACCAGTAACTAATACATTATCGCCTTCTTTAAACTTATCATTCGAACTTGATTCAACAATACCTGCAAAATCTATACCAGGAATCATAGGATAATCTCTAATTACACCGC > CP000731/6416‑6693 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |