New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | USA300TCH1516_ALE | = 710532 | 299 (1.040) | 16 (0.060) | 11/142 | NT | 5.7% | intergenic (+25/+36) | tarA/tagH_1 | N‑acetylglucosaminyldiphosphoundecaprenol N‑acetyl‑beta‑D‑mannosaminyltransferase/Teichoic acids export ATP‑binding protein TagH |
? | USA300TCH1516_ALE | = 710552 | 264 (1.040) | intergenic (+45/+16) | tarA/tagH_1 | N‑acetylglucosaminyldiphosphoundecaprenol N‑acetyl‑beta‑D‑mannosaminyltransferase/Teichoic acids export ATP‑binding protein TagH |
Only 100 of 380 total aligned reads displayed.
GTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCTTTTTAAA > USA300TCH1516_ALE/710462‑710642 | gTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGAtt > 2:4210170/1‑91 (MQ=255) gTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGAtt > 1:71792/1‑91 (MQ=255) taAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTATATGGAGATTctc < 2:3738812‑M2/91‑4 (MQ=255) aaaaTAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTctcg > 1:3472344‑M2/1‑87 (MQ=255) aaaTAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTctcgg > 1:2914564‑M2/1‑86 (MQ=255) aaTAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTctcggt > 1:913522‑M2/1‑85 (MQ=255) aTAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTctcggtt < 1:1341246‑M2/91‑8 (MQ=255) aGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTctcggtttt > 2:811924‑M2/1‑82 (MQ=255) gCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGttttt > 1:990860/1‑91 (MQ=255) gCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGttttt > 1:580460/1‑91 (MQ=255) gCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGttttt > 1:3723101/1‑91 (MQ=255) ccAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGtttttt > 2:3993149/1‑91 (MQ=255) ccAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGtttttt > 2:4334207/1‑91 (MQ=255) cAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTc > 1:2644410/1‑91 (MQ=255) aaaGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCg > 1:1009332/1‑91 (MQ=255) aaaGAAAAAAAAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCg < 2:3167646/91‑1 (MQ=255) aaGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCgg > 2:5625367/1‑91 (MQ=255) aaGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCgg < 2:5312500/91‑1 (MQ=255) aGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGt < 1:2677748/91‑1 (MQ=255) aGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGt > 2:4413018/1‑91 (MQ=255) aGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGt > 2:2879166/1‑91 (MQ=255) aaaaaaGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGttt < 2:297229/90‑1 (MQ=255) aaaaaGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGttta < 2:483196/91‑1 (MQ=255) aaaaGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtttat < 1:691641/91‑1 (MQ=255) aaaaGAAAAATAAAAAAGGAGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtttat < 2:1440623/91‑1 (MQ=255) aaaGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtttatt > 1:2601710/1‑91 (MQ=255) aaaGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtttatt > 1:4187235/1‑91 (MQ=255) aaaGAAAAATAAAAAAGGCGAAATAATCATCATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCAGtttatt > 1:4493118/1‑91 (MQ=255) aGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtttattta > 2:3145152/1‑91 (MQ=255) aGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtttattta > 1:5114440/1‑91 (MQ=255) aGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGtttattta > 1:5052791/1‑91 (MQ=255) gAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTtaa > 1:1448619/1‑91 (MQ=255) gAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTtaa > 2:1902760/1‑91 (MQ=255) aaaaaTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTtaat > 1:4264553/1‑91 (MQ=255) aaaaaTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTtaat < 1:1914977/91‑1 (MQ=255) aaaaTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTtaata < 2:3361567/91‑1 (MQ=255) aaaaTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTtaata > 1:2758399/1‑91 (MQ=255) aaaTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTtaataa > 2:640351/1‑91 (MQ=255) aaTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAAc < 1:1557170/91‑1 (MQ=255) aTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACg < 2:1231978/91‑1 (MQ=255) aTAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACg > 1:1183075/1‑91 (MQ=255) aaaaaaGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGaa > 2:2317794/1‑91 (MQ=255) aaaaGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGc > 1:124853/1‑91 (MQ=255) aaaGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCg > 2:1949473/1‑91 (MQ=255) aaaGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCg < 1:4821641/91‑1 (MQ=255) gCGAAATAATAAGGATGACAAAAATAAAACCGAGGAAAACCTTAAATGGAGATTCTCGGTTTTTGCGGTTTATTTAATAACGAAGCGGGAc < 2:552816/91‑1 (MQ=255) cGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACt > 1:1049601/1‑91 (MQ=255) aaaTAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCa > 2:350977/1‑91 (MQ=255) aataatCATGATGACAAAAATAAAACCGCGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCAt > 2:5407269/1‑91 (MQ=255) aataatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCAt > 2:1709395/1‑91 (MQ=255) aataatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCAt > 1:2524935/1‑91 (MQ=255) aataatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCAt < 2:5577872/91‑1 (MQ=255) aataatCATGATGACAAAAATAAAACCGAGGAAATACTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCAt < 2:5077638/91‑1 (MQ=255) ataatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATc > 2:2458109/1‑91 (MQ=255) taatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCg < 2:2553888/91‑1 (MQ=255) aatCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGa > 2:4760044/1‑91 (MQ=255) atCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAg < 1:807413/91‑1 (MQ=255) tCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGAGTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgt < 2:3536479/91‑1 (MQ=255) cATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgtt < 2:2205565/91‑1 (MQ=255) atgatgACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgttt > 2:1592491/1‑91 (MQ=255) atgatgACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgttt > 2:2760741/1‑91 (MQ=255) atgatgACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgttt < 1:527432/91‑1 (MQ=255) atgatgACAAAAATAAAACCGAGGAAAACCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgttt < 2:2670076/91‑1 (MQ=255) gatgaCAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgtttgt > 1:4800179/1‑91 (MQ=255) atgaCAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAgtttgtt < 1:20188/91‑1 (MQ=255) aCAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCt < 1:2225747/91‑1 (MQ=255) aCAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCt < 2:609210/91‑1 (MQ=255) aaaaaTAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTaa > 2:5339149/1‑91 (MQ=255) aaaaTAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTTTTTTTTTTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTaaa > 2:2101062/1‑91 (MQ=255) aaaaTAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTaaa > 1:453121/1‑91 (MQ=255) aaaaTAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTaaa < 1:3015666/91‑1 (MQ=255) aaTAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAAtt < 1:4613706/91‑1 (MQ=255) aCCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCttttt > 2:4246589/1‑91 (MQ=255) aCCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCttttt > 2:3268450/1‑91 (MQ=255) cGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGTGACTCATCGAGTTTGTTTCTAAATTCTTTTTGt < 1:5608592/91‑1 (MQ=255) cGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGt < 1:3875062/91‑1 (MQ=255) gAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGtt < 2:4558252/91‑1 (MQ=255) gacaTCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCgg < 2:4988499/88‑1 (MQ=255) aaTCCTTAAATGGAGATTctcggttttatttttgtcatcatgattatttcgccttttttatttttctttttgctttggctattttatacat < 1:1697544‑M2/91‑74 (MQ=255) aTCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCtt < 1:2440985/91‑1 (MQ=255) aTCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCtt < 1:2943198/91‑1 (MQ=255) aTCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCtt < 1:3496459/91‑1 (MQ=255) tCCTTAAATGGAGATTctcggttttatttttgtcatcatgattatttcgccttttttatttttctttttgctttggctattttatacataa < 1:6640‑M2/91‑76 (MQ=255) tCCTTAAATGGACATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCttt < 2:3639399/91‑1 (MQ=255) ccTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTg < 2:384070/91‑1 (MQ=255) cTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTgg > 1:619751/1‑91 (MQ=255) cTTAAATGGAGATTCTCGGTTGTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTGGTTTCTAAATTCTTTTTGTTCGGCTTTgg > 2:1546070/1‑91 (MQ=255) ttAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGa < 1:1630494/91‑1 (MQ=255) aaaTGGAGATTCTCGGTTTTTTTTTTTTTTTTTATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGAtt > 2:2285083/1‑91 (MQ=255) aaaTGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGAtt < 1:1299845/91‑1 (MQ=255) ggAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCtt < 1:3193324/91‑1 (MQ=255) agaTTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCtttt > 1:4915032/1‑91 (MQ=255) agaTTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCtttt < 2:3091034/91‑1 (MQ=255) agaTTCTCGGTTTTTTCGGTTTATTTAAGAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCtttt < 1:5451595/91‑1 (MQ=255) gaTTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCttttt < 1:524046/91‑1 (MQ=255) gaTTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCttttt < 1:4326083/91‑1 (MQ=255) gaTTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCttttt < 1:3641358/91‑1 (MQ=255) tctcGGTTTTTTTTGTTTTTTTAATAACGAAGCGGGTCTCATCGAGTTTGTTTCTATATTCTTTTTGTTCGGCTTTGGATTTCTTTTTaaa > 2:4894992/1‑91 (MQ=255) tctcGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTTAATTCTTTTTGTTCGGCTTTGGATTTCTTTTTaaa < 1:3988267/91‑1 (MQ=255) tctcGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCTTTTTaaa < 2:74665/91‑1 (MQ=255) | GTATAAAATAGCCAAAGCAAAAAGAAAAATAAAAAAGGCGAAATAATCATGATGACAAAAATAAAACCGAGGAAATCCTTAAATGGAGATTCTCGGTTTTTTCGGTTTATTTAATAACGAAGCGGGACTCATCGAGTTTGTTTCTAAATTCTTTTTGTTCGGCTTTGGATTTCTTTTTAAA > USA300TCH1516_ALE/710462‑710642 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |