New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | USA300TCH1516_ALE | 2863041 = | 262 (0.910) | 15 (0.060) | 11/142 | NT | 5.9% | intergenic (+11/+49) | USA300TCH1516_02707/USA300HOU_RS14670 | hypothetical protein/hypothetical protein |
? | USA300TCH1516_ALE | 2863075 = | 249 (0.980) | intergenic (+45/+15) | USA300TCH1516_02707/USA300HOU_RS14670 | hypothetical protein/hypothetical protein |
Only 100 of 383 total aligned reads displayed.
TTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATA > USA300TCH1516_ALE/2862985‑2863165 | ttCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTGCGGCTTTtct < 1:1891751/91‑1 (MQ=255) tcagaattcaatgatcactgtgcttcgccatactgattttatagcacagagAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCtgt > 1:2147150‑M1/52‑91 (MQ=255) tCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCtgt > 2:2091073/1‑91 (MQ=255) tCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCtgt > 2:1056462/1‑91 (MQ=255) tCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCtgt < 1:3784170/91‑1 (MQ=255) cGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCtgtg < 1:4300518/91‑1 (MQ=255) cGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCtgtg > 1:4447499/1‑91 (MQ=255) aaGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCt < 1:1349185/91‑1 (MQ=255) aaGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCt < 2:1514772/91‑1 (MQ=255) aGATGATAAACTTGTCCAGCTTAATTTTACAATCTAAAGATTTATAATATATCGGTTTGTCATTTCGAAAATACGGGTTTTCTCTGTGCta > 2:459133/1‑91 (MQ=17) aGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCta > 2:4337282/1‑91 (MQ=255) atgatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCtata > 2:3587561/1‑91 (MQ=255) gatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATaaa > 2:4267427/1‑91 (MQ=255) gatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATaaa > 2:783673/1‑91 (MQ=255) gatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATaaa > 1:1464340/1‑91 (MQ=255) gatAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATaaa > 2:5024169/1‑91 (MQ=255) tAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAAt > 1:1150495/1‑91 (MQ=255) aaCTTGTCCAGCTTAATTTGACAATCTAAAGATTTATATAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCa > 2:1356996/1‑91 (MQ=255) aCTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAg < 2:4179916/91‑1 (MQ=255) aCTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAg < 1:3473287/91‑1 (MQ=255) cTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGt < 2:2634532/91‑1 (MQ=255) cTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGt > 2:2880508/1‑91 (MQ=255) cTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGt < 1:1950217/91‑1 (MQ=255) gTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATg > 1:2408831/1‑91 (MQ=255) tCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATgg > 2:1015714/1‑91 (MQ=255) tCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATgg > 2:3724884/1‑91 (MQ=255) ccAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGc > 2:2582076/1‑91 (MQ=255) ccAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGc < 2:3045462/91‑1 (MQ=255) ccAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGc < 1:5216068/91‑1 (MQ=255) ccAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGc > 1:4016107/1‑91 (MQ=255) cAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCg > 2:320331/1‑91 (MQ=255) aGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGa < 1:421705/91‑1 (MQ=255) cTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAg > 1:4096046/1‑91 (MQ=255) ttAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGc < 1:1580891/91‑1 (MQ=255) tAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGca > 1:1205946/1‑91 (MQ=255) aTTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGcaca < 2:4224755/91‑1 (MQ=255) aTTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGcaca > 2:3068153/1‑91 (MQ=255) tttGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAg < 2:4832086/91‑1 (MQ=255) tGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTg < 1:2732534/91‑1 (MQ=255) tGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTg > 2:3993719/1‑91 (MQ=255) tGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTg > 1:78239/1‑91 (MQ=255) aCAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTAGGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGAt > 2:5442748/1‑91 (MQ=255) aCAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGAt > 2:2315071/1‑91 (MQ=255) aaTCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCa < 2:3488291/91‑1 (MQ=255) aaTCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCa < 1:5505161/91‑1 (MQ=255) aTCTAAAGATTTCTAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCAt < 2:3631465/91‑1 (MQ=255) tCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCAtt < 2:1906012/91‑1 (MQ=255) cTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCAttt > 2:5083151/1‑90 (MQ=255) cTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTg > 2:5657723/1‑91 (MQ=255) cTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTg > 1:4552207/1‑91 (MQ=255) aaGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAAt < 1:2682307/91‑1 (MQ=255) gATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTc < 1:4792712/91‑1 (MQ=255) aTTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCt > 2:3384313/1‑91 (MQ=255) ataAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACt > 1:3246196/1‑91 (MQ=255) ataAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACt < 2:5251233/91‑1 (MQ=255) ataAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACt > 1:2237733/1‑91 (MQ=255) taAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACtt < 1:2039202/91‑1 (MQ=255) taAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACtt > 2:3021355/1‑91 (MQ=255) aaaaaGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTta > 1:3137951/1‑91 (MQ=255) aaaaaGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTta < 1:3114474/91‑1 (MQ=255) AAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTtata < 2:2168878‑M1/91‑1 (MQ=255) AAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTtata < 1:2286188‑M1/91‑1 (MQ=255) AAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTtata > 2:2189709‑M1/1‑91 (MQ=255) GCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATaa < 1:660670‑M1/91‑1 (MQ=255) GCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATaa < 1:86959‑M1/91‑1 (MQ=255) GCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATaa < 1:2600631‑M1/91‑1 (MQ=255) GTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCa < 2:552706‑M1/91‑1 (MQ=255) TTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCaa < 1:3697255‑M1/91‑1 (MQ=255) agtttcgaagagaccaacggcttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAag > 1:2954375‑M2/26‑91 (MQ=255) ggTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAaga < 1:384985/91‑1 (MQ=255) ggTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAaga > 1:5109654/1‑91 (MQ=255) tttcgaagagaccaacggcttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAagag > 2:2498084‑M2/24‑91 (MQ=255) gTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAagag < 2:1568449/91‑1 (MQ=255) gTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAagag < 1:2867150/91‑1 (MQ=255) tctTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTAt < 2:3648726/91‑1 (MQ=255) ctTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATc < 2:5364524/91‑1 (MQ=255) ctTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATc < 1:1736359/91‑1 (MQ=255) ctTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATc > 2:4688556/1‑91 (MQ=255) cGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATccaa < 1:2634082/91‑4 (MQ=255) gAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTg > 1:2782258/1‑91 (MQ=255) gAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTg < 1:4162613/91‑1 (MQ=255) aaCTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGa < 1:3395703/91‑1 (MQ=255) aCTACGGCTTTTCTCTGTGCTATAAGATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGAt < 1:5583683/91‑1 (MQ=255) cTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATa > 1:2163842/1‑91 (MQ=255) cTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATa > 1:1676784/1‑91 (MQ=255) acggcttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATaca > 2:1170632‑M2/10‑91 (MQ=255) acggcttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATaca > 2:3870831‑M2/10‑91 (MQ=255) ggcttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACt < 1:3941925‑M2/84‑1 (MQ=255) gcttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACtg > 2:4497799‑M2/7‑91 (MQ=255) gcttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACtg > 2:16187‑M2/7‑91 (MQ=255) gcttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACtg < 1:4896399‑M2/85‑1 (MQ=255) gcttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACtg < 1:4382551‑M2/85‑1 (MQ=255) gcttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACtg < 2:702884‑M2/85‑1 (MQ=255) cttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACtga > 2:1932718‑M2/6‑91 (MQ=255) ttttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACtgat > 2:919023‑M2/5‑91 (MQ=255) ttCTCTGTGCTATAATACCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACtgatga < 2:3295097‑M2/89‑1 (MQ=255) ttCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATAAACtgatga < 2:4054523‑M2/89‑1 (MQ=255) tCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTgatgat > 2:2391248‑M2/2‑91 (MQ=255) ctctGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGata < 2:1816438/91‑1 (MQ=255) ctctGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGata < 2:168191/91‑1 (MQ=255) | TTTCATCGAAGATGATAAACTTGTCCAGCTTAATTTGACAATCTAAAGATTTATAAAAAAGCCGTTGGTCTCTTCGAAACTACGGCTTTTCTCTGTGCTATAAAATCAGTATGGCGAAGCACAGTGATCATTGAATTCTGACTTTATATAATCAAGAGTATCTTTGGATACACTGATGATA > USA300TCH1516_ALE/2862985‑2863165 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |