| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 825232 | 50 (0.940) | 4 (0.080) | 4/250 | NT | 7.5% | coding (24/1056 nt) | tagO | putative undecaprenyl‑phosphate N‑acetylglucosaminyl 1‑phosphate transferase |
| ? | USA300TCH1516_ALE | = 825273 | 51 (1.000) | coding (65/1056 nt) | tagO | putative undecaprenyl‑phosphate N‑acetylglucosaminyl 1‑phosphate transferase | |||||
GAACGAATTAATTTATAATAAAGCTATAAGATATACGTAGAAAATAGATATATCATTCTATAAAGACAATATTAAATAAATATAACGTTAAAAACAATTAATATCGATGAAGGTGAATAAATGGTTACATTATTACTAGTTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/825089‑825232‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcaATAACAATTGGTGTTATCGTCAAACTGACAATCATTGTTACTGCAACTAGTAATAATGTAACCATTTATTCACCTTCATCGATATTAATTGTTTTTAACGTTATATTTATTTAATATTGTCTTTATAGAATGATATATCT < USA300TCH1516_ALE/825273‑825134 GAACGAATTAATTTAGAATAAAGCTATAAGATATGCGTAGAAAATAGATATATCATTCTATAAAGACAATATTAAATAAATATAACGTTAAAAACACTTAATATCGATGAAGGTGAATAACTGGTTACATTATTACTAGTT < 1:404194/141‑1 ACGAATTAATTTATAATAAAGCTATAAGATATACGTAGAAAATAGATATATCATTCTATAAAGACAATATTAAATAAATATAACGTTAAAAACAATTAATATCGATGAAGGTGAATAAATGGTTACATTATTACTAGTTGC > 1:663403/1‑141 CTATAAAGACAATATTAAATAAATATAACGTTAAAAACAATTAATATCGATGAAGGTGAATAAATGGTTACATTATTACTAGTTGCAATAACAATTGGTGTTATCGTCAAACTGACAATCATTATTACTGCAACTAGTAAT > 2:509822/1‑141 AATATTAAATAAATATAACGTTAAAAACAATTAATATCGATGAAGGTGAATAAATGGTTACATTATTACTAGTTGCAATAACAATTGGTGTTATCGTCAAACTGACAATCATTGTTACTGCAACTAGTAATAATGTAACCA > 2:501379/1‑141 TGGTTACATTATTACTAGTTGCAATAACAATTGGTGTTATCGTCAAACTGACAATCATTGTTACTGCAACTAGTAATAATGTAACCATTTATTCACCTTCATCGATATTAATTGTTTTTAACGTTATATTTATTTAATATT < 1:501379/141‑1 ATTACTATTTGCAATAACAATTGGTGTTATCGTCAAACTGACAATCATTGTTACTGCAACTAGTAATAATGTAACCATTTATTCACCTTCATCGATATTAATTGTTTTTAACGTTATATTTATTTAATATTGTCTTTATAG < 1:509822/141‑1 TTGCAATAACAATTGGTGTTATCGTCAAACTGACAATCATTGTTACTGTAACTAGTAATAATGTAACCATTTATTCACCTTCATCGCTATTAATTGTTTTTAACGTTATATTTATTTAATATTCTCTTTATAGAATGATAT > 2:633691/1‑141 TTGCAATAACAATTGGTGTTATCGTCAAACTGACAATCATTGTTACTGCAACTAGTAATAATGTAACCATTTATTCACCTTCATCGATATTAATTGTTTTTAACGTTATATTTATTTAATATTGTCTTTATAGAATGATAT > 2:275815/1‑141 AATAACAATTGGTGTTATCGTCAAACTGACAATCATTGTTACTGCAACTAGTAATAATGTAACCATTTATTCACCTTCATCGATATTAATTGTTTTTAACGTTATATTTATTTAATATTGTCTTTATAGAATGATATATCT > 2:497846/1‑141 GAACGAATTAATTTATAATAAAGCTATAAGATATACGTAGAAAATAGATATATCATTCTATAAAGACAATATTAAATAAATATAACGTTAAAAACAATTAATATCGATGAAGGTGAATAAATGGTTACATTATTACTAGTTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/825089‑825232‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgcaATAACAATTGGTGTTATCGTCAAACTGACAATCATTGTTACTGCAACTAGTAATAATGTAACCATTTATTCACCTTCATCGATATTAATTGTTTTTAACGTTATATTTATTTAATATTGTCTTTATAGAATGATATATCT < USA300TCH1516_ALE/825273‑825134 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |