breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
Marginal read alignment evidence | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | USA300TCH1516_ALE | 512,643 | 0 | A | G | 57.1% | 43.9 / 85.6 | 70 | intergenic (+711/‑6052) | recR/speA_2 | Recombination protein RecR/Arginine decarboxylase |
* | USA300TCH1516_ALE | 111,512 | 0 | A | G | 30.2% | 76.5 / 39.0 | 53 | S194S (TCA→TCG) | USA300HOU_RS00520 | putative lipoprotein |
* | USA300TCH1516_ALE | 111,516 | 0 | C | A | 26.0% | 110.4 / 34.0 | 50 | Q196K (CAA→AAA) | USA300HOU_RS00520 | putative lipoprotein |
Marginal new junction evidence (sorted from low to high skew) | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | USA300TCH1516_ALE | = 2850830 | 28 (0.860) | 3 (0.100) | 3/268 | 3.8 | 10.3% | intergenic (+29/+90) | pcp/USA300HOU_RS14605 | Pyrrolidone‑carboxylate peptidase/hypothetical protein |
? | USA300TCH1516_ALE | = 2850851 | 27 (0.910) | intergenic (+50/+69) | pcp/USA300HOU_RS14605 | Pyrrolidone‑carboxylate peptidase/hypothetical protein | |||||
* | ? | CP000731 | = 1526 | 145 (0.830) | 5 (0.010) +TTG |
5/290 | 24.6 | 1.2% | intergenic (+311/‑545) | repA/USA300HOU_pUSA300HOUMR0003 | replication protein A/hypothetical protein |
? | NC_012417 | = 997 | 692 (0.900) | intergenic (+9/+6) | USA300HOU_RS14890/USA300HOU_RS15665 | replication protein/hypothetical protein |