BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1205383 =	111 (0.860)	41 (0.390) +TTCCTAGGGTGCCGTCTCAGCCTCG	7/228	13.6	33.1%	intergenic (‑264/‑305)	USA300HOU_RS15290/lspA	hypothetical protein/Lipoprotein signal peptidase
*	?	USA300TCH1516_ALE	2478476 =	91 (0.710)	41 (0.390) +TTCCTAGGGTGCCGTCTCAGCCTCG	7/228	13.6	33.1%	intergenic (+363/‑212)	USA300HOU_RS12760/USA300HOU_RS12765	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 111 total aligned reads displayed.

GTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTTACTACTGTCTTTTTAGGGATTTATGTTCCAGCCTGCTTTCCTAATTTTTAATGTCATCTTA  >  USA300TCH1516_ALE/1205244‑1205518

 ttAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGc                                                                                                                                        <  1:309635/141‑1 (MQ=255)

 ttAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGAAAGAAGATGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGc                                                                                                                                        <  2:53388/141‑1 (MQ=255)

  tAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGCCCGAGGCTGAGACGGCCCCCTAGGAAGGGACCCATCATCAACAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCg                                                                                                                                       <  4:51171/141‑1 (MQ=255)

  tAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCg                                                                                                                                       >  2:340109/1‑141 (MQ=255)

   aaTACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGa                                                                                                                                      >  2:96242/1‑141 (MQ=255)

    aTACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGaa                                                                                                                                     <  1:595762/141‑1 (MQ=255)

       cGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGcc                                                                                                                                  >  2:881606/1‑141 (MQ=255)

         tagtaTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCAt                                                                                                                                >  1:812767/1‑141 (MQ=255)

          agtaTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCAtt                                                                                                                               >  1:880114/1‑141 (MQ=255)

          agtaTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGGCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCAtt                                                                                                                               <  2:1030746/141‑1 (MQ=255)

           gtaTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCCTTc                                                                                                                              >  1:1006/1‑141 (MQ=255)

             aTTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCaa                                                                                                                            <  3:256260/141‑1 (MQ=255)

              ttAATGGCGAGACTCCTGAGGGAGCAGCGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAAt                                                                                                                           <  1:63267/141‑1 (MQ=255)

               tgaTGGCGCGACTCCTGAGGGCGCAGTGCCCGTCGAAGACCGAGGCTGAGCCGGCACCCTAGGAAGGGACCCATCCTCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATACAATa                                                                                                                          <  2:43559/139‑1 (MQ=18)

               tAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATa                                                                                                                          >  2:286950/1‑141 (MQ=255)

               tAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATa                                                                                                                          <  1:184345/141‑1 (MQ=255)

                 aTGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACg                                                                                                                        >  2:780511/1‑141 (MQ=255)

                 aTGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACg                                                                                                                        >  2:677288/1‑141 (MQ=255)

                 aTGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACg                                                                                                                        >  4:143428/1‑141 (MQ=255)

                  tagCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGa                                                                                                                       >  2:321208/3‑141 (MQ=255)

                   ggCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATActtc                                                                                                                      <  4:72505/141‑4 (MQ=255)

                     cGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGt                                                                                                                    <  2:350089/141‑1 (MQ=255)

                          cTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGt                                                                                                               <  3:70440/141‑1 (MQ=255)

                          cTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGt                                                                                                               >  4:321013/1‑141 (MQ=255)

                          cTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGt                                                                                                               <  3:73513/141‑1 (MQ=255)

                            ccTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGtat                                                                                                             >  2:188937/1‑141 (MQ=255)

                            ccTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGtat                                                                                                             >  1:708929/1‑141 (MQ=255)

                             cTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGtata                                                                                                            >  1:523903/1‑141 (MQ=255)

                               gAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATaaa                                                                                                          >  1:14790/1‑141 (MQ=255)

                               gAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATaaa                                                                                                          >  2:75782/1‑141 (MQ=255)

                               gAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATaaa                                                                                                          >  3:447636/1‑141 (MQ=255)

                               gAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGACACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATaaa                                                                                                          >  1:66932/1‑141 (MQ=255)

                                ggggAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAAt                                                                                                         <  1:356654/140‑1 (MQ=255)

                                  ggAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATag                                                                                                       <  1:897229/141‑1 (MQ=255)

                                     gCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAgaga                                                                                                    <  1:722120/141‑1 (MQ=255)

                                      cAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGaa                                                                                                   <  3:34896/141‑1 (MQ=255)

                                       aGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAAc                                                                                                  <  2:34479/141‑1 (MQ=255)

                                         tGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAAcag                                                                                                >  4:115276/1‑141 (MQ=255)

                                           ccAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTACTGTGCAAGATGGGCTTCGAGCCGAACTTCAATAAGCAGTATTGTATAAATAGAGAAcagca                                                                                              >  3:380231/1‑141 (MQ=14)

                                              gTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTa                                                                                           >  1:301747/1‑141 (MQ=255)

                                                 gAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGa                                                                                        >  2:430466/1‑141 (MQ=40)

                                                 gAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGa                                                                                        >  2:828932/1‑141 (MQ=40)

                                                  aaGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATAATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAt                                                                                       <  2:296684/141‑1 (MQ=38)

                                                  aaGACCGAGGCTGAGACGGCACCATAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAACGAAGACATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGAt                                                                                       <  1:123924/141‑1 (MQ=255)

                                                    gACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATaa                                                                                     >  2:924846/1‑141 (MQ=38)

                                                     aCCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAAt                                                                                    >  2:688953/1‑141 (MQ=38)

                                                        gatgCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAAtttt                                                                                 >  2:649972/4‑141 (MQ=25)

                                                         aGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGCATTTTACCGTTATGTTCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAAttttt                                                                                <  1:884206/141‑1 (MQ=255)

                                                         aGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAAttttt                                                                                >  1:740424/1‑141 (MQ=38)

                                                             ggagaCGGAAACCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAAGGTGCCAGACGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGACCAGCAGTAAGATAATTTTTAAtt                                                                            <  1:182838/140‑1 (MQ=11)

                                                              gagaCGGCACCCTAGGAAGGGACCCGTCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTCAATTa                                                                           <  2:700184/141‑1 (MQ=12)

                                                                 aCGGCACACTAGGAATGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑aa                                                                       <  4:299295/141‑1 (MQ=255)

                                                                  cGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑aaa                                                                      <  1:340109/141‑1 (MQ=255)

                                                                  cGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑aaa                                                                      <  2:676915/141‑1 (MQ=255)

                                                                  cGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAAGAGAGAACAGCAGTAAGATAATTTTTAATTAG‑aaa                                                                      >  1:969680/1‑141 (MQ=255)

                                                                    gCACCCTAGGAAGGGACCCGTCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTCAATTAG‑AAAat                                                                    <  2:396264/141‑1 (MQ=255)

                                                                    gCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAat                                                                    <  2:348581/141‑1 (MQ=255)

                                                                      aCCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAatat                                                                  <  2:151792/141‑1 (MQ=255)

                                                                       cccTAGGAATGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATc                                                                 >  1:918531/1‑141 (MQ=255)

                                                                       cccTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATc                                                                 >  1:16156/1‑141 (MQ=255)

                                                                       cccTAGGAAGGGACCCATCATCAAAAATTCTATTCATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCCATACGAAGTATTGTATAAATAGAGAACAGCAGT‑AGATAATTGTTAATTAG‑AAAATAGCt                                                                >  3:359964/1‑141 (MQ=14)

                                                                            ggAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTtact                                                            >  1:57787/1‑141 (MQ=255)

                                                                              aaGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTtactac                                                          >  1:2167/1‑141 (MQ=255)

                                                                              aaGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTtactac                                                          <  3:143428/141‑1 (MQ=255)

                                                                               aGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTTactact                                                         >  3:285768/1‑141 (MQ=255)

                                                                                gggACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTTACTACTg                                                        >  2:118544/1‑141 (MQ=255)

                                                                                gggACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTTACTACTg                                                        <  4:275972/141‑1 (MQ=255)

                                                                                 ggACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTTACTACTGt                                                       >  3:77123/1‑141 (MQ=255)

                                                                                      catcatCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAGAAAAATATCTTACTACTGTCttt                                                   >  2:237704/1‑141 (MQ=255)

                                                                                      catcatCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTTACTACTGTCtttt                                                  >  4:158772/1‑141 (MQ=255)

                                                                                            caAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTTACTACTGTCTTTTTAGGGa                                            <  3:321013/141‑1 (MQ=255)

                                                                                              aaaaTTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTTACTACTGTCTTTTTAGGGAtt                                          <  3:211889/141‑1 (MQ=255)

                                                                                               aaaTTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTTACTACTGTCTTTTTAGGGAttt                                         >  4:379383/1‑141 (MQ=255)

                                                                                               aaaTTCTATTTATAGAATTTTACAGTAATGGGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTTACTACTGTCTTTTTAGGGAttt                                         <  2:667223/141‑1 (MQ=255)

                                                                                                aaTTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTTACTACTGTCTTTTTAGGGATTTa                                        <  1:656395/141‑1 (MQ=255)

                                                                                                aaTTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTTACTACTGTCTTTTTAGGGATTTa                                        >  4:115205/1‑141 (MQ=255)

                                                                                                    ctataaataGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTTACTACTGTCTTTTTAGGGATTTATGtt                                    >  4:352755/7‑141 (MQ=255)

                                                                                                      aTTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTTACTACTGTCTTTTTAGGGATTTATGTTcc                                  >  3:431525/1‑141 (MQ=255)

                                                                                                      aTTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTTACTACTGTCTTCTTAGGGAATTATGTTcc                                  >  2:770271/1‑141 (MQ=255)

                                                                                                        ttATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTTACTACTGTCTTTTTAGGGATTTATGTTCCAg                                <  2:812767/141‑1 (MQ=255)

                                                                                                        ttATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTTACTACTGTCTTTTTAGGGATTTATGTTCCAg                                <  4:105161/141‑1 (MQ=255)

                                                                                                              aaTTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTTACTACTGTCTTTTTAGGGATTTATGTTCCAGCCTGCt                          <  2:708929/141‑1 (MQ=255)

                                                                                                                  ttACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTTACTACTGTCTTTTTAGGGATTTATGTTCCAGCCTGCTTTcc                      <  1:908660/141‑1 (MQ=255)

                                                                                                                    aCAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTCTTGTATAAATAGAGAACAGCAGTAAGATAGTTTTTACTTAG‑ACGATTTCTTATTACTGTCTTTTTAGTGATTTATGTTCCAGCCTGCTTTCCTa                    >  1:937156/1‑141 (MQ=18)

                                                                                                                    aCAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTTACTACTGTCTTTTTAGGGATTTATGTTCCAGCCTGCTTTCCTa                    >  4:48832/1‑141 (MQ=255)

                                                                                                                    aCAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTTACTACTGTCTTTTTAGGGATTTATGTTCCAGCCTGCTTTCCTa                    <  1:185932/141‑1 (MQ=255)

                                                                                                                    aCAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTAT‑TATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTTACTACTGTCTTTTTAGGGATTTATGTTCCAGCCTGCTTTCCTaa                   >  2:677815/1‑141 (MQ=255)

                                                                                                                            gtgCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTTACTACTGTCTTTTTAGGGATTTATGTTCCAGCCTGCTTTCCTAATTTTTaa            >  2:198452/1‑141 (MQ=255)

                                                                                                                            gtgCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTTACTACTGTCTTTTTAGGGATTTATGTTCCAGCCTGCTTTCCTAATTTTTaa            >  1:244452/1‑141 (MQ=255)

                                                                                                                               ccAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTTACTACTGTCTTTTTAGGGATTTATGTTCCAGCCTGCTTTCCTAATTTTTAATGt         >  2:764934/1‑141 (MQ=255)

                                                                                                                               ccAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTTACTACTGTCTTTTTAGGGATTTATGTTCCAGCCTGCTTTCCTAATTTTTAATGt         >  2:174057/1‑141 (MQ=255)

                                                                                                                                 aGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTTACTACTGTCTTTTTAGGGATTTATGTTCCAGCCTGCTTTCCTAATTTTTAAttgta       >  2:596403/1‑137 (MQ=255)

                                                                                                                                  gATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTTACTACTGTCTTTTTAGGGATTTATGTTCCAGCCTGCTTTCCTAATTTTTAATGTCAt      <  1:649972/141‑1 (MQ=255)

                                                                                                                                  gATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTTACTACTGTCTTTTTAGGGATTTATGTTCCAGCCTGCTTTCCTAATTTTTAATGTCAt      <  1:430466/141‑1 (MQ=255)

                                                                                                                                   aTGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTTACTACTGTCTTTTTAGGGATTTATGTTCCAGCCTGCTTTCCTAATTTTTAATGTCATc     <  1:321878/141‑1 (MQ=255)

                                                                                                                                    tGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTTACTACTGTCTTTTTAGGGATTTATGTTCCAGCCTGCTTTCCTAATTTTTAATGTCATCt    <  1:473720/141‑1 (MQ=255)

                                                                                                                                     gggCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTTACTACTGTCTTTTTAGGGATTTATGTTCCAGCCTGCTTTCCTAATTTTTAATGTCATCtt   <  1:343367/141‑1 (MQ=255)

                                                                                                                                      ggCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTTACTACTGTCTTTTTATGGATTTATGTTCCAGCCTGCTTTCCTAATTTTTAATGTCATCTTa  >  2:689614/1‑141 (MQ=255)

                                                                                                                                      ggCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTTACTACTGTCTTTTTAGGGATTTATGTTCCAGCCTGCTTTCCTAATTTTTAATGTCATCTTa  <  1:199256/141‑1 (MQ=255)

                                                                                                                                      ggCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTTACTACTGTCTTTTTAGGGATTTATGTTCCAGCCTGCTTTCCTAATTTTTAATGTCATCTTa  >  4:39192/1‑141 (MQ=255)

GTTAATACGTAGTATTAATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAGGGACCCATCATCAAAAATTCTATTTATAGAATTTTACAGTAATGTGCCAGATGGGCATAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAACAGCAGTAAGATAATTTTTAATTAG‑AAAATATCTTACTACTGTCTTTTTAGGGATTTATGTTCCAGCCTGCTTTCCTAATTTTTAATGTCATCTTA  >  USA300TCH1516_ALE/1205244‑1205518

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.