New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	52495 =	77 (0.860)	67 (0.760) +T	4/278	10.6	45.0%	intergenic (+105/‑568)	USA300HOU_RS00215/USA300HOU_RS00220	hypothetical protein/hypothetical protein
	?	USA300TCH1516_ALE	= 52988	88 (0.990)					intergenic (+598/‑75)	USA300HOU_RS00215/USA300HOU_RS00220	hypothetical protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.

TTGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAA  >  USA300TCH1516_ALE/52355‑52632                                                                                                                                             |                                                                                                                                          ttgttTTTTAAAGCATTAGATGCCTTAAAGAAATAGGTCTTCATTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATcgc                                                                                                                                           <  1:762373/141‑1 (MQ=255) ttgttTTTTAAAACATTAGATGCCTTAAAGAAAAAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATcgc                                                                                                                                           <  1:545426/141‑1 (MQ=255)    tgtttgAAAGGAGTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTg                                                                                                                                        >  2:982502/3‑141 (MQ=255)       tttAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGaaa                                                                                                                                     <  1:989227/141‑1 (MQ=255)         tAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAaata                                                                                                                                   >  2:783565/1‑141 (MQ=255)         tAAAGCAATAGATGCCATAAAGAAATAGTTTTACACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAaata                                                                                                                                   <  1:367934/141‑1 (MQ=255)          aaaGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAaataa                                                                                                                                  >  1:646664/1‑141 (MQ=255)             gCATTAGAGGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCa                                                                                                                               <  2:414120/141‑1 (MQ=255)              cATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGGTGTGGAAATCGCGTGAAATAATCag                                                                                                                              >  1:279939/1‑141 (MQ=255)                 tAGATGCCTTAAAGAAATAGTTTTTCTCTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAgg                                                                                                                           <  1:597547/141‑1 (MQ=255)                   gATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCggaaggg                                                                                                                         >  1:461954/1‑137 (MQ=255)                   gATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGaa                                                                                                                         >  1:296603/1‑141 (MQ=255)                   gATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGaa                                                                                                                         >  1:774407/1‑141 (MQ=255)                   aaagCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGaa                                                                                                                         <  2:383220/138‑1 (MQ=255)                    aTGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAAt                                                                                                                        <  1:826936/141‑1 (MQ=255)                    aTGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAAt                                                                                                                        >  2:311826/1‑141 (MQ=255)                    aTGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAAt                                                                                                                        >  2:918072/1‑141 (MQ=255)                    aTGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATGAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGGTCTGAAATACGAAAAATGTTTTGGAAATCGCGTGAAATAATCAGAGGAAt                                                                                                                        <  2:120928/141‑1 (MQ=255)                      gacTTAAAGAAATAGGTTTTCACTGAAAATATTTAGAGATAGAATGAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCg                                                                                                                      <  1:202137/139‑1 (MQ=255)                      gCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTGAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCg                                                                                                                      >  1:573333/1‑141 (MQ=255)                      gCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTGATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCg                                                                                                                      >  1:4033/1‑141 (MQ=255)                      gCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCg                                                                                                                      <  2:871068/141‑1 (MQ=255)                       ccTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGt                                                                                                                     >  2:310221/1‑141 (MQ=255)                       ccTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGt                                                                                                                     >  1:817896/1‑141 (MQ=255)                         ttAAAGAAATAGTTTTTCACTGAATATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGttt                                                                                                                   <  2:619943/141‑1 (MQ=255)                         ttAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGttt                                                                                                                   <  1:460880/141‑1 (MQ=255)                          tAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTg                                                                                                                  <  2:180911/141‑1 (MQ=255)                          aaaaGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTg                                                                                                                  <  2:962070/140‑1 (MQ=255)                            aaGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGaa                                                                                                                >  2:426292/1‑141 (MQ=255)                             aGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTAAAATACGAAAAATGTTGTGGCAATCGCGTGAAATAATCAGAGGAATCGTTTGaaa                                                                                                               <  1:674492/141‑1 (MQ=255)                                    gTTTTTAACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGGGAAATAATCAGAGGAATCGTTTGAAATAATCga                                                                                                        >  1:744926/1‑140 (MQ=255)                                     tttttCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATAGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCgta                                                                                                       >  1:181859/1‑141 (MQ=255)                                      ttttCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAGTAATCAGAGGAATCGTTTGAAATCATCgtag                                                                                                      <  2:952115/141‑1 (MQ=255)                                         tCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGCAATAATCAGAGGAATCGTTTGAAATCATCGTAGTaa                                                                                                   >  1:752723/1‑141 (MQ=255)                                          cACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAAt                                                                                                  <  1:624385/141‑1 (MQ=255)                                            cTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcg                                                                                                <  2:263533/141‑1 (MQ=255)                                            cTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcg                                                                                                <  1:311512/141‑1 (MQ=255)                                             tGAAAATATTTATAGATATAATTAAAATTAATTTATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAAGGTTGTGTAAATCGCGTGAAATAATCAGAGGAATCGCTTGAAATCATAGTATTAATcac                                                                                               >  2:653184/1‑139 (MQ=38)                                               aaaaTATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAACCATCGTAGTAATcgcgc                                                                                             <  2:16551/141‑1 (MQ=255)                                                     tttATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAAt                                                                                       <  2:360491/141‑1 (MQ=255)                                                       tataAATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAGATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATAGCGCGGAAAtag                                                                                     >  2:600600/1‑139 (MQ=255)                                                         aaGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATAGTAGTCATCCCACCAAAGTCACg                                                                                   <  2:706254/140‑1 (MQ=38)                                                                    aaaattaaTTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCCCGTGAAATAATCa                                                                        <  1:653184/141‑1 (MQ=255)                                                                      aattaattAATATTATGCCAGGATAAAGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATGAGAGGTATCGTTTCAAATCATCGTAGTAATCGCGCGAGAATCACGTGAAATAATCaga                                                                      <  1:601387/141‑1 (MQ=25)                                                                            ttaatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAAtg                                                                >  1:449128/1‑140 (MQ=255)                                                                             taatATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCg                                                               <  2:39115/141‑1 (MQ=255)                                                                             taatATTAAGCAAAGATAATGTAGTCGTAATCGTTCTGAAATACGAAAAATGTTGTGGAACTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATAGTAGTACTCGCGCGAAAATACCCTGAAATAATCAGTGGAATcc                                                               <  2:236634/141‑2 (MQ=21)                                                                             taatATGAAGCCAGGAGAATGGAGTCTTCATCGTTCGGAAATACGAAAAATGTTGGGGAAATCGCGTGAAATAATCAGAGGAAGCGTTGTAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATACTCAGAGGAATCg                                                               <  2:739093/141‑1 (MQ=21)                                                                             taatATGAAGCCAGGAGAAGTGAGTCTGAATCGTTCTGAAATAAGGAAAAGGCGGGTGAAATCGCGTGACATAATCAGAGGAATCGTTTGAAATCATCGTAGCAATCGCGCGAAAATCCCGTGAAATAATCAGAGGAATCg                                                               <  2:739211/141‑1 (MQ=14)                                                                                tatTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGttt                                                            >  1:81131/1‑141 (MQ=255)                                                                                    aaGCCAGGATAATTGTGTCATAATTGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGaaa                                                        <  2:369624/141‑1 (MQ=18)                                                                                          ggATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCg                                                  >  1:753274/1‑141 (MQ=255)                                                                                           gATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgt                                                 >  1:857043/1‑141 (MQ=255)                                                                                           gATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCgt                                                 >  1:279546/1‑141 (MQ=255)                                                                                                tGTAGTCTTAATCGTGCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTaa                                            >  1:734876/1‑141 (MQ=255)                                                                                                 gTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAAt                                           >  2:833584/1‑141 (MQ=255)                                                                                                  tAGTCTTAATCGTTCTGAAAGACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAAGAAGCGTTTGAAATCATCGTAGTAATCGCGCGACAATCGCGTAAAATACTCAGAGAAATAGTTTGAAGTAATCGAAGGAAta                                          >  1:598666/1‑140 (MQ=17)                                                                                                    gtgttAATTGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGGAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgc                                        <  2:682266/138‑1 (MQ=255)                                                                                                    gTCTTAATATTTACGAAATACGAAAAATGTTGTGGAAATCGCGTAAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATcgc                                        <  2:345717/141‑1 (MQ=17)                                                                                                        tAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGa                                    >  1:29756/1‑141 (MQ=255)                                                                                                         aaTCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAAACATCGTAGTAATCGCGCGAAAATCACGTGAAAAAATCAGAGGTATCGTGTGACATCATCGTAGAAAACGCGCGaa                                   >  1:57156/1‑141 (MQ=18)                                                                                                         aaTCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGGTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTCTGAAATCATCGTAGTAATCGCGCGaa                                   >  1:604573/1‑141 (MQ=255)                                                                                                           tCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGaaaa                                 >  1:169499/1‑141 (MQ=255)                                                                                                            cGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAATTCCTTGTAGTAATCGCGCGAAAAt                                <  1:982502/141‑1 (MQ=255)                                                                                                               tCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGGTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCAc                             <  1:612490/141‑1 (MQ=255)                                                                                                                 tGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGt                           <  1:201366/141‑1 (MQ=255)                                                                                                                     aTACGTAAAATGTAGTGGTAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCCCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaaa                       <  1:259053/141‑1 (MQ=255)                                                                                                                     aTACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGaaa                       <  1:79631/141‑1 (MQ=255)                                                                                                                          aaaaaTGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATc                  >  1:955216/1‑141 (MQ=255)                                                                                                                            aaaTGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAAGCATCGTAGTAATAACGCGAAAAGCACGTGAAATAATAAGAGGAATCGTTTGAAATCATCGTAGTAGTATCGCGAAAATCACGTGAAAAAATAag                >  2:445745/1‑141 (MQ=14)                                                                                                                             aaTGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCaga               <  1:889462/141‑1 (MQ=40)                                                                                                                              aTGTTGTGGAGATCGCGTGGAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCagag              <  1:217523/141‑1 (MQ=255)                                                                                                                               tgttgtGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAgg             >  1:127176/1‑141 (MQ=39)                                                                                                                                 ttgtGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGaa           >  1:311823/1‑141 (MQ=38)                                                                                                                                  tgtgGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAAt          <  1:144143/141‑1 (MQ=35)                                                                                                                                   gtgGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATc         <  1:842319/141‑1 (MQ=35)                                                                                                                                      aaaaTCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGtt      <  1:833584/140‑1 (MQ=17)                                                                                                                                        aagcgcgGGAAATAATCTGAGGAATCGTTTGAAATCATCGTAGTAATTTCGCGAAAATCACGTGAAATAATCAGAAGAATCGTTTGAAATTATCGTAGTAATCTCGCCAAAATCACGTGAAATAATCAGAGGAATCGTTTg    <  1:574939/138‑1 (MQ=11)                                                                                                                                        aacagcgTGAAATTATCAGGGGAAACATGTGAAAACATCATAGAAATTGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTg    <  2:98084/137‑1 (MQ=11)                                                                                                                                          tCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGaa  >  1:702532/1‑141 (MQ=32)                                                                                                                                            gcgTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGaa                                                                  >  1:694467/1‑75 (MQ=31)                                                                                                                                             |                                                                                                                                          TTGTTTTTTAAAGCATTAGATGCCTTAAAGAAATAGTTTTTCACTGAAAATATTTATAGATATAATTAAAATTAATTAATATTAAGCCAGGATAATGTAGTCTTAATCGTTCTGAAATACGAAAAATGTTGTGGAAATCGCGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAAATCATCGTAGTAATCGCGCGAAAATCACGTGAAATAATCAGAGGAATCGTTTGAA  >  USA300TCH1516_ALE/52355‑52632

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.