New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | USA300TCH1516_ALE | = 260294 | 49 (0.770) | 3 (0.050) | 3/238 | NT | 6.1% | intergenic (‑408/‑180) | potD_1/pflB | Spermidine/putrescine‑binding periplasmic protein/Formate acetyltransferase |
? | USA300TCH1516_ALE | = 260312 | 48 (0.820) | intergenic (‑426/‑162) | potD_1/pflB | Spermidine/putrescine‑binding periplasmic protein/Formate acetyltransferase |
TTTAATCCAGTCTCTTCATATATAAAAGTAAATCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/260146‑260294 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgtgtaacagTAATATGCTAATT‑GC‑‑ATT‑CTGTTACACAACAGTTATAATGTTCACTATTTTCATTGCTTTAAAAGTTAATTTAGGAGTATATATTTGTTTATAAAAAATGATTGTTGATAAGCGTTAAATCAACACTTAGAAAGATTT < USA300TCH1516_ALE/260312‑260175 ttgAATCCAGTCTCTTCATATATAAAAGTAAATCTTTCTAAGTGTTCATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTG < 2:643948/138‑1 TAATCCAGTCTCTTCATATATAAAAGTAAATCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATAGTCCTAAGTTAACGTTGAAAGCAATGAAAATAGTGAACATTATAACTGTTGTG < 2:755168/141‑1 AATCCAGTCTCTTCATATATAAAAGTAAATCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGT < 1:558946/141‑1 ATCCAGTCTCTTCATATATAAAAGTAAATCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTA < 2:589/141‑1 TCCAGTCTCTTCATATATAAAAGTAAATCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAA > 2:320335/1‑141 CCAGTCTCTTCATATATAAAAGTAAATCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAAC < 1:700220/141‑1 AGTCTCTTCATATATAAAAGTAAATCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG < 1:660738/141‑1 AGTCTCTTCATATATAAAAGTAAATCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG < 2:652654/141‑1 AGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAGTAATATGCTAATT‑AC‑‑ATT‑CTGTTACACAACAG > 2:381563/1‑141 TACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑‑A‑ATGCAATTA‑GCATATTACTGTTACACAACAGTTATAATGTTCACTATTTTCATTGCTTTAAAAGTTAATTTAGGAGTA < 2:629436/140‑1 TACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑‑A‑ATGC‑AATTAGCATATTACTGTTACACAACAGTTATAATGTTCACTATTTTCATTGCTTTAAAAGTTAATTTAGGAGTA > 1:629436/1‑140 TGTGTAACAGTAATATGCTAATT‑GC‑‑ATT‑CTGTTACACAACAGTTATAATGTTCACTATTTTCATTGCTTTAAAAGTTAATTTAGGAGTATATATTTGTTTATAAAAAATGATTGTTGATAAGCGTTAAATCAACACTTAGA > 2:462013/1‑141 TGTGTAACAGTAATATGCTAATT‑GC‑‑ATT‑CTGTTACACAACAGTTATAATGTTCACTATTTTCATTGCTTTAAAAGTTAATTTAGGAGTATATATTTGTTTATAAAAAATGATTGTTGATAAGCGTTAAATCAACACTTAGA > 2:462321/1‑141 TGTAACAGTAATATGCTAATT‑GC‑‑ATT‑CTGTTACACAACAGTTATAATGTTCACTATTTTCATTGCTTTAAAAGTTAATTTAGGAGTATATATTTGTTTATAAAAAATGATTGTTGATAAGCGTTAAATCAACACTTAGAAA > 1:461531/1‑141 ACATTAATATTCTAATT‑GC‑‑ATT‑CTGTTACACAACAGTTATAATGTTCACTATTTTCATTGCTTTAAAAGTTAATTTAGGAGTATATATTTGTTTATAAAAAATGATTGTTGATAAGCGTTAAATCAACACTTAGAAAGATT < 1:275238/141‑1 ACAGTAATATGCTAATT‑GC‑‑ATT‑CTGTTACACAACAGTTATAATGTTCACTATTTTCATTGCTTTAAAAGTTAATTTAGGAGTATATATTTGTTTATAAAAAATGATTGTTGATAAGCGTTAAATCAACACTTAGAAAGATT > 1:505311/1‑141 CAGTAATATGCTAATT‑GC‑‑ATT‑CTGTTACACAACAGTTATAATGTTCACTATTTTCATTGCTTTAAAAGTTAATTTAGGAGTATATATTTGTTTATAAAAAATGATTGTTGATAAGCGTTAAATCAACACTTAGAAAGATTT > 1:568920/1‑141 TTTAATCCAGTCTCTTCATATATAAAAGTAAATCTTTCTAAGTGTTGATTTAACGCTTATCAACAATCATTTTTTATAAACAAATATATACTCCTAAATTAACTTTTAAAGCAATGAAAATAGTGAACATTATAACTGTTGTGTAACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/260146‑260294 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgtgtaacagTAATATGCTAATT‑GC‑‑ATT‑CTGTTACACAACAGTTATAATGTTCACTATTTTCATTGCTTTAAAAGTTAATTTAGGAGTATATATTTGTTTATAAAAAATGATTGTTGATAAGCGTTAAATCAACACTTAGAAAGATTT < USA300TCH1516_ALE/260312‑260175 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |