New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | USA300TCH1516_ALE | = 1205323 | 62 (0.970) | 3 (0.050) +AGCGAA |
3/248 | NT | 6.3% | intergenic (‑204/‑365) | USA300HOU_RS15290/lspA | hypothetical protein/Lipoprotein signal peptidase |
? | USA300TCH1516_ALE | = 1893309 | 32 (0.500) | intergenic (‑170/+177) | USA300TCH1516_01750/ytpA | hypothetical protein/Phospholipase YtpA |
ATTTATTAAATTATACGAAGGGACCCAACACAGAAAATTCATTTTATTGAATTTTACATTTATGTGCAAGTTGGGAAAAATGTCTTATTTTTTCAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAAC > USA300TCH1516_ALE/1893169‑1893408 | atttattAAATTATACGAAGGGACCCAACACAGAAAATTCATTTTATTGAATTTTACATTTATGTGCAAGTTGGGAAAAATGTCTTATTTTTTCAAAGTATTGAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGc > 1:112198/1‑141 (MQ=255) tttattAAATTATACGAAGGGACCCAACACAGAAAATTCATTTTATTGAATTTTACATTTATGTGCAAGTTGGGAAAAATGTCTTATTTTTTCAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCg > 1:323586/1‑141 (MQ=255) tttattAAATTATACGAAGGGACCCAACACAGAAAATTCATTTTATTGAATTTTACATTTACGTGCAAGTTGGGAAAAATGTCTTATTTTATCGAAGTATTGAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCg < 1:337196/141‑1 (MQ=255) tttattAAATTATAAGAAGGGACGCAACAGAGAAAATTCATTTTATTGAATTTTACATTTATGGGCAAGTTGGGAAAAATGTCTTATTTTTTTAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCg < 1:337513/141‑1 (MQ=11) tattaAATTATACGAAGGGACCCAACACAGAAAATTCATTTTATTGAATTTTACATTTATGTGCAAGTTGGGAAAAATGTCTTATTTTTTCAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCgag < 1:351706/141‑1 (MQ=255) attaAATTATACGAAGGGACCCAACACAGAAAATTCATTTTATTGAATAGTGCATTTATGTGCAAGTTGGGAAAAATGTCTTATTTTTTCAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCgaga > 1:597545/1‑141 (MQ=255) taAATTATACGAAGGGACCCAACACAGAAAATTCATTTTATTGAATTTTACATTTATGTGCAAGTTGGGAAAAATGTCTTATTTTTTCAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTTTT‑AATGGCGAGACt > 1:126387/1‑141 (MQ=255) aaaTTATACGAAGGGACCCAACACAGAAAATTCATTTTATTGAATTTTACATTTATGTGCAAGTTGGGAAAAATGTCTTATTTTTTCAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTc < 1:527173/141‑1 (MQ=255) aaTTATACGAAGGGACCCAACACAGAAAATTCATTTTATTGAATTTTACATTTATGTGCAAGTTGGGAAAAATGTCTTATTTTTTCAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTcc > 2:441069/1‑141 (MQ=255) aaTTATACGAAGGGACCCAACACAGAAAATTCATTTTATTGAATTTTACATTTATGTGCAAGTTGGGAAAAATGTCTTATTTTTTCAAAGTATTTAAAAGTAAAATTAAATGGTAATACGTAGTATT‑AATGGCGAGACTcc < 2:701915/141‑1 (MQ=255) aTTATACGAAGGGACCCAACACAGAAAATTCATTTTATTGAATTTTACATTTATGTGCAAGTTGGGAAAAATGTCTTATTTTTTCAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCt < 1:349461/141‑1 (MQ=255) aCGAAGGGACCCAACACAGAAAATTCATTTTATTGAATTTTACATTTATGTGCAAGTTGGGAAAAATGTCTTATTTTTTCAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTGAATGGCttcgctttcctag < 1:507450‑M2/141‑14 (MQ=255) cGAAGGGACCCAACACAGAAAATTCATTTTATTGAATTTTACATTTATGTGCAAGTTGGGAAAAATGTCTTATTTTTTCAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGTCGAGACTCCTGATGGa > 2:231178/1‑141 (MQ=255) cGAAGGGACCCAACACAGAAAATTCATTTTATTGAATTTTACATTTATGTGCAAGTTGGGAAAAATGTCTTATTTTTTCAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGa > 1:115742/1‑141 (MQ=255) gggACCCAACACAGAAAATTCATTTTATTGAATTTTACATTTATGTGCAAGTTGGGAAAAATGTCTTATTTTTTCAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAg > 2:236768/1‑141 (MQ=255) gACCCAACACAGAAAATTCATTTTATTGAATTTTACATTTATGTGCAAGTTGGGAAAAATGTCTTATTTTTTCAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTg > 2:34217/1‑141 (MQ=255) cccAACACAGAAAATTCATTTTATTGGATTTTACATTTATGTGCAAGTTGGGAAAAATGTCTTATTTTTTCAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGcc < 2:510685/141‑1 (MQ=255) ccAACACAGAAAATTCATTTTATTGAATTTTACATTTATGTGCAAGTTGGGAAAAATGTCTTATTTTTTCAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCa > 2:546808/1‑141 (MQ=255) aTTCATTTTATTGAATTTTGCGTTAATGTGCAAGTTGGGAAAAATGTCTTATTTTTTCAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGa > 2:544455/1‑141 (MQ=255) tCATTTTATTGAATTTTACATTTATGTGCAAGTGGGGAAAAATGTCTTATTTTTTCAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACCCCTGAGGGAGCAGCGCCAGGCGAAGACCGAgg < 2:184002/141‑1 (MQ=255) aTTTTATTGAATTTTACATTTATGTGCAAGTTGGGAAAAATGTCTTATTTTTTCAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCt > 2:69237/1‑141 (MQ=255) tATTGAATTTTACATTTATGTGCAAGTTGGGAAAAATGTCTTATTTTTTCAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTgaga < 2:574933/141‑1 (MQ=255) tttACATTTATGTGCAAGTTGGGATAAATGTCTTATTTTTTCAAAGTTTTTAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCGGTGCCAGTCGGAGTCCGAGGCTGAGACGGCAccc > 1:184822/1‑141 (MQ=14) tttACATTTATGTGCAAGATGGCGTAGATGTCTTATTTTTTCAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCAccc > 1:184885/1‑141 (MQ=14) aCATTTATGTGCAAGTTGGGTAAAATGTCTTATTTTTTCAAAGTATTTAAAAGTAAACTTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAg > 1:51595/1‑141 (MQ=255) aTTTATGTGCAAGTTGGGAAAAATGTCTTATTTTTTCAAATTATTTAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGa > 2:385039/1‑141 (MQ=255) tATGTGCAAGTTGGGAAAAATGTCTTATTTTTTCAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAg > 1:65801/1‑141 (MQ=255) tgtgCAAGTTGGGAAAAATGTCTTATTTTTTCAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCg < 1:34217/141‑1 (MQ=255) gCAAGTTGGGAAAAATGTCTTATTTTTTCAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAg < 2:115742/141‑1 (MQ=255) gCAAGTTGGGAAAAATGTCTTATTTTTTCAAAGTATTTAAAAGTAAAATTACATGTGAATACGTAGTATT‑AATGGCGAGACTCCTGAGTGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAg < 2:224360/141‑1 (MQ=255) gCAAGTTGGGAAAAATGTCTTATTTTTTCAAAGTATGTAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcaggagtctcg > 1:589907‑M2/1‑76 (MQ=255) ggAAAAATGTCTTATTTTTTCAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCaa > 1:60824/1‑141 (MQ=255) aTGTCTTATTTTTTCAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAATCGAAGCCATTCAATActtc < 1:88650/141‑4 (MQ=25) aTGTCTTATTTTTTCAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGGGAAGCCATTCAATACGaa > 2:170145/1‑141 (MQ=25) ttttCAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGtata < 1:65546/141‑1 (MQ=35) ttttCAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGtata < 1:364143/141‑1 (MQ=35) ttCAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATaaa > 2:146449/1‑141 (MQ=34) ttCAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATaaa > 1:80185/1‑141 (MQ=35) tCAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATTGAATGGCttcgctttcctagggtgccgtctcagcctcggtcttcgactggcactgctccctcagaagtctcgccatcaatactacgtattaacatgta > 2:507450‑M2/1‑50 (MQ=255) aGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATagag > 1:357347/1‑141 (MQ=32) ttttAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAATACCGAGGCTGTGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAAc > 2:667177/2‑141 (MQ=14) | ATTTATTAAATTATACGAAGGGACCCAACACAGAAAATTCATTTTATTGAATTTTACATTTATGTGCAAGTTGGGAAAAATGTCTTATTTTTTCAAAGTATTTAAAAGTAAAATTACATGTTAATACGTAGTATT‑AATGGCGAGACTCCTGAGGGAGCAGTGCCAGTCGAAGACCGAGGCTGAGACGGCACCCTAGGAAAGCGAAGCCATTCAATACGAAGTATTGTATAAATAGAGAAC > USA300TCH1516_ALE/1893169‑1893408 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |