Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP000731	3453	3700	248	2 [1]	[1] 2	USA300HOU_pUSA300HOUMR0005/USA300HOU_pUSA300HOUMR0006	hypothetical protein/hypothetical protein

TTTATACTGTTTATTGCCTTTGATAGTTAATTTGTCTATTTATGGTTTTTATGTTTTTGTTAAAAGAAAGTAAGATTATGAATAATTTTGTTTTTAATTTGTATGCTTTGAGGGGGTTGGAAAACGGTAGGTGTATAGATTAGATTTC  >  CP000731/3312‑3459                                                                                                                                             |        tttATACTGTTTATTGCCTTTGATAGTTAATTTGTCTATTTATGGTTTTTATGTTTTTGTTAAAAGAAAGTAAGATTATGAATAATTTTGTTTTTAATTTGTATGCTTTGAGGGGGTTGGAAAACGGTAGGTGTAtagatt         <  2:460695/141‑1 (MQ=255)        tttttATTGTCTTTGATATTATATTTGTTCATTTTTGGTTTTTATGTTTTTGTTAAAAGAAAGTAAGATTATGAATAATTTTGTTTTTAATTTGTATGCTTTGAGGGGGTTGGAAAACGGTAGGTGTATAGATTAGATTTc  <  2:48958/139‑1 (MQ=255)                                                                                                                                             |        TTTATACTGTTTATTGCCTTTGATAGTTAATTTGTCTATTTATGGTTTTTATGTTTTTGTTAAAAGAAAGTAAGATTATGAATAATTTTGTTTTTAATTTGTATGCTTTGAGGGGGTTGGAAAACGGTAGGTGTATAGATTAGATTTC  >  CP000731/3312‑3459

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑