| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 891727 | 207 (0.580) | 14 (0.040) | 8/152 | NT | 5.3% | intergenic (+145/‑594) | USA300HOU_RS04385/rnmV_2 | hypothetical protein/Ribonuclease M5 |
| ? | USA300TCH1516_ALE | = 1695091 | 303 (0.890) | intergenic (‑297/+233) | hemN_1/lepA | Oxygen‑independent coproporphyrinogen‑III oxidase‑like protein YqeR/Elongation factor 4 | |||||
CTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/891634‑891727‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttctACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTTATGCATGAGTTTTACTCAT < USA300TCH1516_ALE/1695091‑1695002 CTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATT > 1:6747312/1‑91CTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATT > 1:6745594/1‑91CTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATT < 1:6602516/91‑1CTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATT > 1:2747695/1‑91 TAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTT < 2:391807/91‑1 TAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTT < 1:6646036/91‑1 AGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTC < 1:1494155/91‑1 AGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTC > 2:5000214/1‑91 AGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGAGAAT‑CCAATTTC > 2:4626599/1‑91 GGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGACATTGGGAAT‑CCAATTTCT > 2:2130606/1‑91 GGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCT > 2:6239822/1‑91 GGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCT > 1:1955942/1‑91 GGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCT > 1:1954665/1‑91 GGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCT > 1:2234642/1‑91 GGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCT > 2:1978267/1‑91 GGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCT > 1:2472852/1‑91 GGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCT > 2:2044971/1‑91 GGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCT > 1:6020091/1‑91 GGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCT > 1:4831921/1‑91 GGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCT < 1:481609/91‑1 GGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCT > 2:2927733/1‑91 GGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCT > 2:460292/1‑91 GGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCT > 1:3532373/1‑91 GGGAGTGGGACATAAATGATATCTTCGCAAAATTTATTCCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAACTTCc > 2:2165080/1‑90 GAGTGGGACATAAATGATATATTCGCAAAATTTATCTCGTCGTCCCACCCCAACTTGCATTGTCTATAGAAATTGGGAAT‑CCAATTTCTAt < 2:5845577/91‑2 AAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATT‑GGATTCCCAATTTCTACAGACAATGCAA < 2:5976076/91‑1 AATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATT‑GGATTCCCAATTTCTACAGACAATGCAAG < 2:1780908/91‑1 GATATTTTCTCAAAATTTATTTCGTCGTCCCACCCCAACTTACATTGTCTGTAGAAATTGGGAAT‑CCAATTTCTACAGACAATGTAAGTTG > 1:3339816/1‑91 CGCAAAATTTATTTCGTCGTCCCACCCCAACGTGCATTGTCTGTAGAAATTGGATTC‑CCAATTTCTACAGACAATGCAAGTTGGGGTGGGA < 1:6126999/91‑1 AATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTCTAGAAATTGGGAAT‑CCAATTTCTACAGCCAATGCACGTTGGGGTGGGACGACG > 2:4214241/1‑91 CCCACCCCAACTTACATTGTCTGTAGAAATTGGGAAT‑CCAATTTCTACAGACAATGTAAGTTGGGGTGGGACGACGAAATAAATTTTGaga > 1:2864485/1‑88 CCCCAACTTGCATTGTCTGTAGAAATTGGATTC‑CCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAAT < 1:3841277/91‑1 aCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCTACAGACAATGTAAGTTGGGGTGGGACGACGAAATAAATTTTGAGAAAATATCATTTCT > 1:4251920/2‑91 ATTGTCTCTAGAAATTGGGAAT‑CCAATTTCTAGAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGTGAAAATATCATTTCTGT < 1:4214241/91‑1 TGTCTGTAGAAATTGGGAAT‑CCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAGTATCATTTCTGTCC < 1:1954632/91‑1 TCTGTAGAAATTGGGAAT‑CCAATTTCTACAGACAATGTAAGTTGGGGTGGGACGACGAAATAAATTTTGAGAAAATATCATTTCTGTCCCA > 2:217517/1‑91 CTGTAGAAATTGGGAAT‑CCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCAC > 2:4986446/1‑91 TAGAAATTGGGAAT‑CCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAGTATCATTTCTGTCCCACTCC > 1:4580089/1‑91 TAGAAATTGGGAAT‑CCAATTTCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCC > 2:1317976/1‑91 TTCTACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTTATGCATGAGTTTTACT > 2:407694/1‑91 TTCTACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTACCAGTCCCTTATGCATGAGTTTTACT > 2:6889556/1‑91 TCTACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCGCTCCCTTATGCATGAGTTTTACTC > 1:6622251/1‑91 TCTACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTTATGCATGCGTTTTACTC > 2:6626994/1‑91 TCTACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTTATGCATGAGTTTTACTC > 2:330702/1‑91 TCTACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTTATGCATGAGTTTTACTC > 2:4043262/1‑91 TCTACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTTATGCATGAGTTTTACTC > 1:5485867/1‑91 TCTACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTTATGCATGAGTTTTACTC > 1:5588941/1‑91 TCTACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTTATGCATGAGTTTTACTC > 1:6622141/1‑91 TCTACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTTATGCATGAGTTTTACTC > 2:4895753/1‑91 TCTACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTTATGCATGAGTTTTACTC > 1:1049682/1‑91 TCTACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTTATGCATGAGTTTTACTC > 1:3541169/1‑91 TCTACAGACAATGCAAGTTGGGGTGGGACGACGAAATACATTTTGCGAAAATATCATTTCTGTCCCACTCCCTTATGCATGAGTTTTACTC > 1:6721320/1‑91 CTACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAACTTTTGCGAAAATATCATTGCTGTCCCACCCCCCTATGCATGAATTTTAGTCA > 2:1631774/1‑91 TACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTTATGCATGAGTTTTACTCct < 2:3707685/91‑3 TACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTTATGCATGAGTTTTACTCAT < 2:3624389/91‑1 CTAGGGAGTGGGACATAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAAT‑CCAATTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/891634‑891727‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttctACAGGCAATGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCTTATGCATGAGTTTTACTCAT < USA300TCH1516_ALE/1695091‑1695002 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |